No abstract

SummaryMetabolomics is becoming an increasingly important tool in plant genomics to decipher the function of genes controlling biochemical pathways responsible for trait variation. Although theoretical models can integrate genes and metabolites for trait variation, biological networks require validation using appropriate experimental genetic systems. In this study, we applied an untargeted metabolite analysis to mature grain of wheat homoeologous group 3 ditelosomic lines, selected compounds that showed significant variation between wheat lines Chinese Spring and at least one ditelosomic line, tracked the genes encoding enzymes of their biochemical pathway using the wheat genome survey sequence and determined the genetic components underlying metabolite variation. A total of 412 analytes were resolved in the wheat grain metabolome, and principal component analysis indicated significant differences in metabolite profiles between Chinese Spring and each ditelosomic lines. The grain metabolome identified 55 compounds positively matched against a mass spectral library where the majority showed significant differences between Chinese Spring and at least one ditelosomic line. Trehalose and branched-chain amino acids were selected for detailed investigation, and it was expected that if genes encoding enzymes directly related to their biochemical pathways were located on homoeologous group 3 chromosomes, then corresponding ditelosomic lines would have a significant reduction in metabolites compared with Chinese Spring. Although a proportion showed a reduction, some lines showed significant increases in metabolites, indicating that genes directly and indirectly involved in biosynthetic pathways likely regulate the metabolome. Therefore, this study demonstrated that wheat aneuploid lines are suitable experimental genetic system to validate metabolomics-genomics networks.

SUMMARYIsometric virus‐like particles (VLP) measuring 35 nm and 27 nm occurred in cultured mycelium of Gaeumannomyces graminis var. tritici and G. graminis var. avenae. These VLP had, respectively, sedimentation coefficients (s°20, W) 148S and 110S and ultraviolet absorption (maximum 260 nm, minimum 240 nm) typical of nucleoprotein (A260:280 = 1.6, A260:240 = 1.2). Preparations of the 35 nm particles had two major and one minor component in caesium chloride, and 27 nm particles had two components (buoyant densities 1.37, 1.36, 1.30, 1.35, and 1.29 g/cm3 respectively). Preparations of the 35 nm particles or 35 nm plus 27 nm particles had one major protein species with estimated molecular weight 70000 daltons.The 35 nm VLP were absent from 11 isolates of G. graminis var. tritici from first cereal crops after fallow or non‐susceptible break crops; two of these contained the 27 nm particles. More than half of 145 isolates, from cereals after 2–12 consecutive susceptible crops, contained either 35 nm or 27 nm VLP. VLP were not confined to G. graminis isolates from soils exhibiting ‘take‐all decline’ nor consistently associated with weak pathogenicity or with isolates of unusual growth, morphology, pigmentation, lysis or readiness to form perithecia. Isolates with one kind of particle were mostly more pathogenic and those with both kinds less pathogenic than isolates without VLP. The proportion of isolates with 27 nm and 35 nm particles increased progressively in samples from different consecutive crops during the first 9 years of cropping, then decreased.Isolates did not gain or lose VLP during infection and re‐isolation from wheat seedlings grown in sand.Four ‘infected’ isolates were freed from VLP either by culturing ascospores or by growing hyphal tips excised from colonies kept near their thermal death point. Both VLP appeared in cultures which had undergone anastomosis with infected isolates.

Genome‐wide, unlinked, simple sequence repeat markers were used to examine genetic variation and relationships within Pyrenophora teres f. teres, a common pathogen of barley, in Western Australia. Despite the region's geographic isolation, the isolates showed relatively high allelic variation compared to similar studies, averaging 7.11 alleles per locus. Principal component, Bayesian clustering and distance differentiation parameters provided evidence for both regional genotypic subdivision together with juxtaposing of isolates possessing different genetic backgrounds. Genotyping of fungicide resistant Cyp51A isolates indicated a single mutation event occurred followed by recombination and long‐distance regional dispersal over hundreds of kilometres. Selection of recently emergent favourable alleles such as the Cyp51A mutation and a cultivar virulence may provide an explanation, at least in part, for juxtaposed genotypes. Factors affecting genotypic composition and the movement of new genotypes are discussed in the context of grower practices and pathogen epidemiology, together with the implications for resistance breeding.

A total of 101 Brassica napus ssp. oleifera accessions with seed differing in glucosinolate and erucic acid contents were screened for resistance to four isolates of Peronospora parasitica at the cotyledon stage. Two groups of accessions with different resistance factors were identified. Lines that were homogeneous for resistance were selected from seedling populations of accessions that exhibited a heterogeneous reaction to some isolates. The resistance of one group differs from that of cv, Cresor, the only oilseed rape cultivar reported to have an isolate‐specific gene for resistance to P. parasitica. The isolate specificity of the second group was identical to that of cv, Cresor, A comparison of the response of host accessions which expressed moderate to full susceptibility at the cotyledon stage, with no clear differential response to any of the four P. parasitica isolates, indicated that those with high glucosinolate and high erucic acid contents (12 accessions) were slightly but significantly less susceptible than those with high glucosinolate and low erucic acid (19 accessions), or low glucosinolate and low erucic acid contents (28 accessions). The mean differences between accessions with low erucic acid but differing in glucosinolate content were inconsistent. The last result was further confirmed by investigating the expression of resistance to three isolates of P. parasitica at three different seedling growth stages among 11 accessions of oilseed rape with seeds low in erucic acid but differing in glucosinolate content.