Fusarium wilts are economically important diseases for which there are no effective chemical control measures. However, biological control and fertility management are becoming efficient alternatives for controlling this disease. Growth media formulated with composts that are able to suppress Fusarium wilt of tomato provide a control system that integrates both strategies. The aim of this study was to predict Fusarium wilt suppression of growth media using abiotic and biotic variables. Grape marc compost was the most effective medium used to suppress Fusarium wilt. Cork compost was intermediate, and light peat and expanded vermiculite were the most conducive growth media. The growth media evaluated were in a pH range of 6.26 to 7.97. Both composts had high beta-glucosidase activity. When pH and beta-glucosidase activity were taken into account as predictive variables, more than 91% of the variation in severity of Fusarium wilt was explained. This relationship illustrates the effect of nutrient availability and the degree of microbiostasis, two key factors in this pathosystem. Microbial populations involved in suppressiveness were cellulolytic and oligotrophic actinomycetes, fungi, and the ratios cellulolytic actinomycetes/cellulolytic bacteria, oligotrophic bacteria/copiotrophic bacteria, and oligotrophic actinomycetes/oligotrophic bacteria. Based on community level physiological profiles, different community structures were evident among growth media evaluated.

Summary The genes required for host‐specific pathogenicity in Fusarium oxysporum can be acquired through horizontal chromosome transfer (HCT). However, it is unknown if HCT commonly contributes to the diversification of pathotypes. Using comparative genomics and pathogenicity phenotyping, we explored the role of HCT in the evolution of F. oxysporum f. sp. fragariae, the cause of Fusarium wilt of strawberry, with isolates from four continents. We observed two distinct syndromes: one included chlorosis (‘yellows‐fragariae’) and the other did not (‘wilt‐fragariae’). All yellows‐fragariae isolates carried a predicted pathogenicity chromosome, ‘chrY‐frag’, that was horizontally transferred at least four times. chrY‐frag was associated with virulence on specific cultivars and encoded predicted effectors that were highly upregulated during infection. chrY‐frag was not present in wilt‐fragariae; isolates causing this syndrome evolved pathogenicity independently. All origins of F. oxysporum f. sp. fragariae occurred outside of the host’s native range. Our data support the conclusion that HCT is widespread in F. oxysporum, but pathogenicity can also evolve independently. The absence of chrY‐frag in wilt‐fragariae suggests that multiple, distinct pathogenicity chromosomes can confer the same host specificity. The wild progenitors of cultivated strawberry (Fragaria × ananassa) did not co‐evolve with this pathogen, yet we discovered several sources of genetic resistance.

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The behaviour of Fusarium oxysporum f.sp. lycopersici (Fol) and the effectiveness of the microbial control agent Trichoderma asperellum strain T34 were examined in hydroponically grown tomato plants under five ammonium/nitrate ratios. The results showed that disease severity was reduced by the action of T34 under increasing concentrations of ammonia. Furthermore, rhizosphere F. oxysporum populations decreased with T34 application. The presence of T34 augmented leaf nitrogen concentration in treatments infested with Fol. In addition, T34 application reduced iron concentration in tomato leaves at high ammonium/nitrate ratios and reduced the severity of Fusarium wilt at high iron and nitrogen leaf concentrations.

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Fusarium

The incidence/severity of soil-borne plant diseases is often reduced when composts are used as growth media. However, much less information is available about the effects of composts on the development of foliar diseases. Here we studied the suppressive capacity of five composts (from olive marc-cotton gin trash, grape marc, cork, spent mushroom and municipal organic and yard wastes) as growth media against Botrytis cinerea disease in cucumber plants. We also examined the putative correlations of several biotic and abiotic factors involved in disease suppression. The suppressive capacity of the growth media was studied by comparing disease incidence/severity in plants grown in composts with that occurring in plants grown in commercial peats, which are conducive to most soilborne diseases. Correlations were made between the occurrence of disease and leaf nutrient status, as well as electrical conductivity (EC) and microbial activity (measured as b-glucosidase activity) in the growth media. Cucumber plants grown in the peats showed greater severity of B. cinerea during the bioassay than those grown in composts. Mo, Ca and Si content in leaves showed negative correlations with this disease. A negative correlation with disease severity was observed for EC and microbial activity in the growth media. The noticeable reduction in B. cinerea in plants grown in composts was related to the supply of specific chemical elements, a certain degree of salt stress, and the high microbial activity of composts.