Genome-wide analysis at the level of single cells has recently emerged as a powerful tool to dissect genome heterogeneity in cancer, neurobiology, and development. To be truly transformative, single-cell approaches must affordably accommodate large numbers of single cells. This is feasible in the case of copy number variation (CNV), because CNV determination requires only sparse sequence coverage. We have used a combination of bioinformatic and molecular approaches to optimize single-cell DNA amplification and library preparation for highly multiplexed sequencing, yielding a method that can produce genome-wide CNV profiles of up to a hundred individual cells on a single lane of an Illumina HiSeq instrument. We apply the method to human cancer cell lines and biopsied cancer tissue, thereby illustrating its efficiency, reproducibility, and power to reveal underlying genetic heterogeneity and clonal phylogeny. The capacity of the method to facilitate the rapid profiling of hundreds to thousands of single-cell genomes represents a key step in making single-cell profiling an easily accessible tool for studying cell lineage.

Since the 1950s, research on the animal neurohormone, melatonin, has focused on its multiregulatory effect on patients suffering from insomnia, cancer, and Alzheimer's disease. In plants, melatonin plays major role in plant growth and development, and is inducible in response to diverse biotic and abiotic stresses. However, studies on the direct role of melatonin in disease suppression and as a signaling molecule in host-pathogen defense mechanism are lacking. This study provides insight on the predicted biosynthetic pathway of melatonin in watermelon (Citrullus lanatus), and how application of melatonin, an environmental-friendly immune inducer, can boost plant immunity and suppress pathogen growth where fungicide resistance and lack of genetic resistance are major problems. We evaluated the effect of spray-applied melatonin and also transformed watermelon plants with the melatonin biosynthetic gene SNAT (serotonin N-acetyltransferase) to determine the role of melatonin in plant defense. Increased melatonin levels in plants were found to boost resistance against the foliar pathogen Podosphaera xanthii (powdery mildew), and the soil-borne oomycete Phytophthora capsici in watermelon and other cucurbits. Further, transcriptomic data on melatonin-sprayed (1 mmol/L) watermelon leaves suggest that melatonin alters the expression of genes involved in both PAMP-mediated (pathogen-associated molecular pattern) and ETI-mediated (effector-triggered immunity) defenses. Twenty-seven upregulated genes were associated with constitutive defense as well as initial priming of the melatonin-induced plant resistance response. Our results indicate that developing strategies to increase melatonin levels in specialty crops such as watermelon can lead to resistance against diverse filamentous pathogens.

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The objective of this study was to determine the best combination of planting dates (PDs) and cultivars on yield and quality for long-term production of romaine lettuce. `Green Forest' (GF), `Apache' (AP), `Darkland' (DK), `Green Tower' (GT), `Ideal Cos' (IC), and `Tall Guzmaine' (TG) were successfully grown to harvest maturity on 19 PDs from September 1998 to April 2001. Lettuce planted in September and April PDs (pooled over cultivars and year), required as little as 47 and 49 days, respectively, to reach harvest (all cultivars harvested on the same day). Lettuce planted in October, November, February, and March PDs (pooled over cultivars and year), required on average 64, 66, 75, and 67 days to reach harvest, respectively, but in the coldest PDs of December and January, 90 and 98 days, respectively, were needed to reach maturity. Of the eight PDs evaluated, marketable numbers/plot (pooled over cultivars and years) were greatest in the September PD, followed by April (–8% decrease from September PD) > March (–13%) > October (–17%) > November (–21%) > December = January = February (about –30%) and heads weighed the most in September > January = February (–7% decrease from September PD) > March = April (–14%) > October (–21%) > December (–25%) > November (–31%). Cull heads/plot (pooled over cultivars and years) were greatest in April > December (–5% decrease from April PD) > January = February (–16%) > November (–27%) > October (–34%) > March (–44%) > September (–49%). Two out of three November PDs were lost to freezing damage and this PD should be avoided. Significant bolting occurred primarily in the September and October PDs (in 1 of 3 years) with negligible bolting in the November, December, and January PDs, but bolting recurred again in the February, March and April PDs. Marketable numbers/plot (pooled over all PDs and years) were greatest for GF > GT (–7% decrease from GF) > AP (–8%) > IC (–9%) > DK (–11%) > TG (–21%). The interaction effect of cultivar × PD indicated that GF yielded the most marketable heads in 6 out of 8 PDs. The best performing cultivars by PD (pooled over years) were September and February = GF and IC; October = TG; November = AP; December, January, March, and April = GF.

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