The electrogenerated chemiluminescence (ECL) of Ru(bpy)3 2+ and tripropylamine, tributylamine, triethylamine, trimethylamine, or sodium oxalate encapsulated within sol-gel-derived silica monoliths have been investigated using an immobilized ultramicroelectrode assembly. The major purpose of this study was to investigate the role of the reductant on the magnitude and stability of the ECL in this solid host matrix. For gel-entrapped Ru(bpy)3 2-/tertiary amines, the shape and intensity of the ECL-potential curves were highly dependent on scan rate. At 10 mV/s, the ECL intensity was ca. 6-fold higher relative to that observed at 500 mV/s. When the ECL acquired at low scan rates was normalized by that obtained in solution under similar conditions, a value of 0.03-0.06 was obtained. In direct contrast, the ECL of the Ru(bpy)3 2+-oxalate system showed little dependence on scan rate, and the ECL was ca. 65-75% of that measured in solution. These differences can be attributed to differences in rotational and translational mobility between the reductants (amines vs oxalate) trapped in this porous solid host For both systems, the ECL was found to be stable upon continuous oxidation or upon drying the gels in a high-humidity environment for over 10 days.

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Transport of single molecules in nanochannels or nanoslits might be used to identify them via their transit (flight) times. In this paper, we present molecular dynamics simulations of transport of single deoxynucleotide 5'-monophoshates (dNMP) in aqueous solution under pressure-driven flow, to average velocities between 0.4 and 1.0 m/s, in 3 nm wide slits with hydrophobic walls. The simulation results show that, while moving along the slit, the mononucleotides are adsorbed and desorbed from the walls multiple times. For the simulations, the estimated minimum slit length required for separation of the dNMP flight time distributions is about 5.9 μm, and the minimum analysis time per dNMP is about 10 μs. These are determined by the nature of the nucleotide-wall interactions, channel width, and by the flow characteristics. A simple analysis using realistic dNMP velocities shows that, in order to reduce the effects of diffusional broadening and keep the analysis time per dNMP reasonably small, the nucleotide velocity should be relatively high. Tailored surface chemistry could lead to further reduction of the analysis time toward its minimum value for a given driving force.

NPT and NP zz T molecular dynamics simulations of Lennard-Jones atoms were used to compare homogeneous and heterogeneous nucleation. In the heterogeneous cases, the attraction between the fluid and a smooth fcc ͑100͒ surface was varied. Multiple simulations were used to determine nucleation times from which nucleation rates were estimated using a transient nucleation model. Calculations demonstrated a clear enhancement in nucleation rates in the heterogeneous cases compared to the homogeneous case. To obtain homogeneous nucleation rates similar to the heterogeneous cases required temperatures about 10 K higher. It was also found that void formation was favored as the attraction between the liquid and solid was decreased. Varying the system size, thermostatting method, and barostat time constant affected quantitative results, but not the qualitative trends.

Electrostatic interactions play a significant role in regulating biological systems and have received increasing attention due to their usefulness in designing advanced stimulus-responsive materials. Polypeptoids are highly tunable N-substituted peptidomimetic polymers that lack backbone hydrogen bonding and chirality. Therefore, polypeptoids are suitable systems to study the effect of noncovalent interactions of substituents without complications of backbone intramolecular and intermolecular hydrogen bonding. In this study, all-atom molecular dynamics (MD) simulations were performed on micelles formed by a series of sequence-defined ionic polypeptoid block copolymers consisting of a hydrophobic segment and a hydrophilic segment in an aqueous solution. By combining the results from MD simulations and experimental small-angle neutron scattering data, further insights were gained into the internal structure of the formed polypeptoid micelles, which is not always directly accessible from experiments. In addition, information was gained into the physics of the noncovalent interactions responsible for the self-assembly of weakly charged polypeptoids in an aqueous solution. While the aggregation number is governed by electrostatic repulsion of the negatively charged carboxylate (COO – ) substituents on the polypeptoid chain within the micelle, MD simulations indicate that the position of the charge on singly charged chains mediates the shape of the micelle through the charge–dipole interactions between the COO – substituent and the surrounding water. Therefore, the polypeptoid micelles formed from the single-charged series offer the possibility for tailorable micelle shapes. In contrast, the polypeptoid micelles formed from the triple-charged series are characterized by more pronounced electrostatic repulsion that competes with more significant charge–sodium interactions, making it difficult to predict the shape of the micelles. This work has helped further develop design principles for the shape and structure of self-assembled micelles by controlling the position of charged moieties on the backbone of polypeptoid block copolymers.