The coastal wetlands of southern Louisiana provide an ideal environment for removing nitrate (NO 3 -) from the Mississippi River before discharge into the gulf of Mexico where it can contribute to hypoxia. However, denitrification, the primary mechanism of excess N removal, may be sensitive to the fluctuating salinities that characterize coastal wetlands. Salinity can shift from salt to fresh during river inflows, or from fresh to salt during storm surge events. This study investigated the impact of shifting salinity on potential denitrification rates in marsh soils and bayou sediments from the fresh and salt marshes of Brenton Sound estuary. Potential denitrification rates were quantified using bottle incubations for both short-term (2 d), and longer-term (11 d) studies. Fresh marsh sites had higher denitrification enzyme activity (DEA), but all soils and sediments achieved high denitrification when exposed to ideal conditions. Pulses of freshwater (0 ppt) in salt marsh soils decreased potential denitrification rates by 98% for an 11-d study, indicating the rapid opening of a freshwater diversion could significantly reduce that ability of coastal wetlands to provide significant nutrient-removal before discharge to the coastal ocean. Pulses of intermediate salinity (15 ppt) water stimulated denitrification rates in the fresh marsh soil by 75%, while full salinity seawater (35 ppt) suppressed potential denitrification by 73% for 11 d. This research demonstrates the sensitivity of the denitrifying microbial consortia to rapid shifts in salinity and this information can be used to guide water managers on maximizing NO 3 removal in Mississippi River surface water diversions.Abbreviations: DEA, denitrification enzyme activity; DI, deionized; DOC, dissolved organic carbon; MBC, microbial biomass carbon; TOC, total organic carbon.from the river, primarily through denitrification, to eliminate hypoxia in the Gulf of Mexico (Mitsch et al., 2001). While this magnitude of wetland restoration may not be feasible, a few large-scale river reconnection projects have been implemented in the Louisiana coastal zone, called diversion projects. For example, the Davis Pond freshwater diversion (completed in 2002 with a maximum discharge rate of 302 m 3 s -1 ) was designed to combat saltwater intrusion and land loss in Barataria Basin . However, it has also effectively reduced surface wa- Core Ideas• Fresh water pulse to salt marsh soil reduced denitrification.• Salt water reduced denitrification by 73% in fresh marsh soil.• Coastal storm surges can dramatically reduce denitrification.• River flood pulses can reduce salt marsh soil denitrification.