The North Atlantic right whale, Eubalaena glacialis (Müller, 1776), is one of the world's most endangered large cetaceans. It is widely believed that Basque whalers caused the most dramatic decline of this species in the western North Atlantic during the early-16th and 17th centuries. Previous osteological analysis of 17 historic bones suggested that 50% of the Basque harvest consisted of right whales and 50% of bowhead whales, Balaena mysticetus L., 1758. This 50:50 ratio has been used to estimate pre-exploitation population size, which has subsequently formed the basis of recovery goals and plans for the North Atlantic right whale. Genetic analysis of 21 bones, 13 identified as right whales and 8 as bowhead whales through osteological examination, indicates that in fact only 1 bone was a right whale and 20 were bowhead whales. Additionally, preliminary microsatellite analyses of this specimen are not consistent with the hypothesis that whaling resulted in the low genetic variation found in this species today. These results differ from what would be expected based on any previous view of Basque whaling, and raise questions regarding the impact of Basque whaling on this species.

ABSTRACT. During the 16th and 17th centuries, Basque whalers travelled annually to the Strait of Belle Isle and Gulf of St. Lawrence to hunt whales. The hunting that occurred during this period is of primary significance for the North Atlantic right whale, Eubalaena glacialis (Müller, 1776), because it has been interpreted as the largest human-induced reduction of the western North Atlantic population, with ~12 250 -21 000 whales killed. It has been frequently reported that the Basques targeted two species in this region: the North Atlantic right whale and the bowhead whale, Balaena mysticetus L., 1758. To evaluate this hypothesis and the relative impact of this period of whaling on both species, we collected samples from 364 whale bones during a comprehensive search of Basque whaling ports from the 16th to the 17th century in the Strait of Belle Isle and Gulf of St. Lawrence. Bones were found and sampled at 10 of the 20 sites investigated. DNA was extracted from a subset (n = 218) of these samples. Analysis of the mitochondrial cytochrome b region identified five whale species. The identification of only a single right whale bone and 203 bowhead whale bones from at least 72 individuals indicates that the bowhead whale was likely the principal target of the hunt. These results imply that this whaling had a much greater impact (in terms of numbers of whales removed) on the bowhead whale population than on the western North Atlantic right whale population.Key words: Balaena mysticetus, Eubalaena glacialis, whaling, Basque, Little Ice Age, historical population size, DNA, bone, cytochrome b RÉSUMÉ. Aux XVI e et XVII e siècles, les baleiniers basques se rendaient tous les ans au détroit de Belle Isle et au golfe du SaintLaurent pour faire la chasse aux baleines. La chasse qui s'est effectuée pendant cette période revêt une grande importance pour la baleine franche ou baleine noire de l'Atlantique Nord, Eubalaena glacialis (Müller, 1776), car cette activité serait interprétée comme la plus grande réduction de la population de baleines franches de l'Atlantique Nord causée par l'être humain, au rythme d'environ 12 250 à 21 000 baleines tuées. On a souvent signalé que les Basques visaient deux espèces dans cette région, soit la baleine franche de l'Atlantique Nord et la baleine boréale, Balaena mysticetus L., 1758. Pour évaluer cette hypothèse et l'incidence relative de cette période de pêche aux baleines sur ces deux espèces, nous avons recueilli des échantillons provenant de 364 ossements de baleines dans le cadre d'une recherche approfondie de ports basques de chasse à la baleine remontant aux XVI e et XVII e siècles dans le détroit de Belle Isle et le golfe du Saint-Laurent. Des ossements ont été trouvés et échantillonnés à 10 des 20 sites ayant fait l'objet de notre recherche. De l'ADN a été extrait d'un sous-ensemble (n = 218) de ces échantillons. L'analyse mitochondriale cytochrome b de la région a permis d'identifier cinq espèces de baleines. L'identification d'un seul os de baleine franche et de 203 os de balei...

Species biogeography is a result of complex events and factors associated with climate change, ecological interactions, anthropogenic impacts, physical geography, and evolution. To understand the contemporary biogeography of a species, it is necessary to understand its history. Specimens from areas of localized extinction are important, as extirpation of species from these areas may represent the loss of unique adaptations and a distinctive evolutionary trajectory. The walrus (Odobenus rosmarus) has a discontinuous circumpolar distribution in the arctic and subarctic that once included the southeastern Canadian Maritimes region. However, exploitation of the Maritimes population during the 16th-18th centuries led to extirpation, and the species has not inhabited areas south of 55°N for ∼250 years. We examined genetic and morphological characteristics of specimens from the Maritimes, Atlantic (O. r. rosmarus) and Pacific (O. r. divergens) populations to test the hypothesis that the first group was distinctive. Analysis of Atlantic and Maritimes specimens indicated that most skull and mandibular measurements were significantly different between the Maritimes and Atlantic groups and discriminant analysis of principal components confirmed them as distinctive groups, with complete isolation of skull features. The Maritimes walrus appear to have been larger animals, with larger and more robust tusks, skulls and mandibles. The mtDNA control region haplotypes identified in Maritimes specimens were unique to the region and a greater average number of nucleotide differences were found between the regions (Atlantic and Maritimes) than within either group. Levels of diversity (h and π) were lower in the Maritimes, consistent with other studies of species at range margins. Our data suggest that the Maritimes walrus was a morphologically and genetically distinctive group that was on a different evolutionary path from other walrus found in the north Atlantic.

During late summer and early autumn, temperate bats migrate from their summering sites to swarming sites, where mating likely occurs. However, the extent to which individuals of a single summering site migrate to the same swarming site, and vice versa, is not known. We examined the migratory connectivity between summering and swarming sites in two temperate, North American, bat species, the little brown bat (Myotis lucifugus) and the northern long-eared bat (Myotis septentrionalis). Using mitochondrial and microsatellite DNA markers, we examined population structuring within and among summering and swarming sites. Both species exhibited moderate degrees of mitochondrial DNA differentiation (little brown bat: FST(SWARMING)= 0.093, FST(SWARMING)= 0.052; northern long-eared bat: FST(SWARMING)= 0.117, FST(SWARMING)= 0.043) and little microsatellite DNA differentiation among summering and among swarming sites. Haplotype diversity was significantly higher at swarming sites than summering sites, supporting the idea that swarming sites are comprised of individuals from various summering sites. Further, pairwise analyses suggest that swarming sites are not necessarily comprised of only individuals from the most proximal summering colonies.

Mitochondrial DNA (mtDNA) sequences were analyzed from 106 bowhead whale (Balaena mysticetus) specimens dating 471 ± 44 14C b.p.–10,290 ± 150 14C b.p. to evaluate whether historical changes in distribution and connectivity were detectable in levels of diversity and population structuring in the Central Canadian Arctic. The species has maintained levels of mtDNA diversity over 10,000 yr comparable to other nonbottlenecked large whale species. When compared to data from the Holocene East Greenland/Spitsbergen and contemporary Bering‐Chuckchi‐Beaufort populations, differentiation was low (FST≤ 0.005, ΦST≤ 0.003) and no temporal or geographical genetic structuring was evident. A combination of analyses suggests that the population has expanded over the past 30,000 14C yr. This genetic signature of expansion could result from population growth, admixture of multiple gene pools, or a combination of both scenarios. Despite known climatic change that altered bowhead distribution and led to isolation of populations, there is no detectable population structuring or change in genetic diversity during the Holocene. This may be due to long generation time, occasional population connectivity and a historically large global population. These characteristics warrant caution when interpreting contemporary bowhead whale DNA data, as it is unlikely that any population will be in mutation‐drift equilibrium.

Low levels of genetic variability identified within the North Atlantic right whale (Eubalaena glacialis), when compared to the Southern right whale (E. australis) and other large whales, have been suggested to result from population reductions due to whaling. Previous genetic analysis of 218 whale bones from sixteenth century Basque whaling sites in the western North Atlantic revealed only a single right whale bone. We determined the genotypes of 27 microsatellite loci using DNA isolated from this bone. All alleles from the historic specimen occur in the extant western North Atlantic population and both the probability of identity of the specimen and the number of heterozygous loci are similar to that in the extant population. Assessments of how genetically different the historical population might have been suggest genetic characteristics have not changed substantially over four centuries of whaling.

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Mitochondrial heteroplasmy has been identified in a variety of species and can result from either paternal leakage, whereby sperm mitochondria enter the ova during fertilization, or more commonly by the "survival" and proliferation of mutant variants within an organism. From an evolutionary perspective, this process represents the generation of new mitochondrial diversity within a species. Although this has been documented in some mammalian species, it has been reported from relatively few wild mammalian populations and in no wild nonhuman population has the transfer and segregation of mitochondrial heteroplasmy been tracked through multiple generations. We report on the first case of the identification and tracking of mitochondrial control region heteroplasmy through 3 generations in the North Atlantic right whale, Eubalaena glacialis. We also identify the full segregation to the mutant variant within a single generation and thus the development of a new haplotype (haplotype G) in a maternal lineage of this endangered species. Witnessed here is the generation of mitochondrial diversity in a genetically depauperate species.