The swamp type of the Asian water buffalo is assumed to have been domesticated by about 4000 years BP, following the introduction of rice cultivation. Previous localizations of the domestication site were based on mitochondrial DNA (mtDNA) variation within China, accounting only for the maternal lineage. We carried out a comprehensive sampling of China, Taiwan, Vietnam, Laos, Thailand, Nepal and Bangladesh and sequenced the mtDNA Cytochrome b gene and control region and the Y-chromosomal ZFY, SRY and DBY sequences. Swamp buffalo has a higher diversity of both maternal and paternal lineages than river buffalo, with also a remarkable contrast between a weak phylogeographic structure of river buffalo and a strong geographic differentiation of swamp buffalo. The highest diversity of the swamp buffalo maternal lineages was found in south China and north Indochina on both banks of the Mekong River, while the highest diversity in paternal lineages was in the China/Indochina border region. We propose that domestication in this region was later followed by introgressive capture of wild cows west of the Mekong. Migration to the north followed the Yangtze valley as well as a more eastern route, but also involved translocations of both cows and bulls over large distances with a minor influence of river buffaloes in recent decades. Bayesian analyses of various migration models also supported domestication in the China/Indochina border region. Coalescence analysis yielded consistent estimates for the expansion of the major swamp buffalo haplogroups with a credibility interval of 900 to 3900 years BP. The spatial differentiation of mtDNA and Y-chromosomal haplotype distributions indicates a lack of gene flow between established populations that is unprecedented in livestock.

Surface soils, which contain the largest pool of terrestrial organic carbon (C), may be able to sequester atmospheric C and thus mitigate climate change. However, this remains controversial, largely due to insufficient data and knowledge gaps in respect of organic C contents and stocks in soils and the main factors of their control. Up to now and despite numerous evaluations of soil organic carbon (SOC) stocks worldwide, the sloping lands of southeast Asia, one of the most biogeochemically active regions of the world, remain uninvestigated. Our main objective was to quantify SOC stocks and to evaluate the impact of various environmental factors. We, therefore, selected Laos with 230 566 km 2 of mostly forested steep slopes, and where cultivation is still mainly traditional, i.e. a system of shifting cultivation without fertilization or mechanical tillage. Analytical data from 3471 soil profiles demonstrated that the top 1 m of soil depth holds an estimated 4.64 billion tons of SOC, 65% of which is in the first 0.3 m. SOC stocks to 0.3 m exhibit a high coefficient of variation (CV 5 62%) with values from 1.8 to 771 Mg C ha À1 and a mean at 129 Mg C ha À1 . Furthermore, these stocks are significantly (at Po0.05 level) affected by land use as shown by principal components analysis and t-tests with the largest amount being found under forest, less under shifting cultivation and the smallest under continuous cultivation. Moreover, SOC stocks correlated regionally to total annual rainfalls and latitude, and locally at the hill-slope level to the distance to the stream network and the slope angle. It is hypothesized that this correlation is through actions on mineral weathering, soil clay content, soil fertility and SOC redistributions in landscapes. These relationships between SOC stocks and environmental factors may be of further use in (1) predicting the impact of global changes on future SOC stocks; and (2) identifying optimal strategies for land use planning so as to minimize soil C emissions to the atmosphere while maximizing carbon sequestration in soils.

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In this study, we analyzed DNA sequence of mitochondrial DNA (mtDNA) control regions on the 130 native domestic pigs and eight wild boars in the mainland South and South-east Asian countries including Bhutan, Cambodia, Laos, Myanmar, and Vietnam. Forty-four haplotypes were found in the 138 individuals, 41 were in the domestic and four were in wild boars. Only one haplotype was shared by domestic and wild population in Bhutan. In other cases, mtDNA of wild boars did not show close affinity to that of the domestic pigs in the same location, indicating that the native domestic pigs in these countries did not originate in the present habitat. Phylogenetic analyzes of mtDNA haplotypes recapitulated several major clusters identified in other studies, but 11 haplotypes were grouped in a new cluster we named MTSEA. In most cases, more than one lineage group were present in a sampling station, indicating that the present indigenous domestic pigs may have multiple origins. The MTSEA haplotypes were present in relatively high frequencies in domestic pigs in the mountainous area of mainland South-east Asia (Cambodia and Laos), with a few found in Myanmar and Bhutan. The distributions of MTSEA haplotypes are in great conformity with the distribution of present-day Mon-Khmer language and indicated the existence of yet another independent domestication. The D2 haplotypes that distribute high frequency (almost 100%) throughout the Chinese breeds were dominant in Bhutan, Myanmar, and Vietnam. These results suggest an existence of human-mediated dispersal of domestic pigs from north to the south during the historical expansion of Sino-Tibetan and Tai peoples. The D3 haplotypes previously reported in north India were found in sympatric domestic and wild pigs in Bhutan. The D3 haplotype is an important proof of independent domestication event and/or great gene flow between wild and domestic pigs in the foot of Himalaya.

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