Soft donor ligands often provide higher selectivity for actinides­(III) over chemically similar lanthanides­(III), e.g., in the AmIII–EuIII pair. Frequently, the origin of such selectivity is associated with an increased covalency in actinide–ligand bonding. However, the relationship between the degree of covalency and ion selectivity has yet to reach general consensus. Further, it is unclear whether the enhanced covalency leads to a thermodynamic stabilization of the complex or not. Using relativistic density functional theory, we have addressed these outstanding issues by analyzing the subtle change of metal–ligand interactions from a hard donor ligand to a mixed soft–hard one. The present comparative study on the structure of and binding in Am3+ and Eu3+ complexes with 3,4,3-LI­(1,2-HOPO) (L) and its mixed-donor variant (LS) shows that the introduction of sulfur as a soft donor atom into the metal coordination sphere indeed infuses an Am3+ selectivity into the otherwise nonselective ligand L but also leads to a significant reduction of the metal-binding Gibbs free energies. Natural population analysis, charge decomposition analysis, and its extended version point to the critical role of ligand-to-metal charge transfer in the overall thermodynamic stability of the complexes. A detailed energy decomposition analysis combining the extended transition state with the natural orbitals chemical valence method reveals an enhancement of the covalency upon switching to the soft–hard donor ligand because of the different nature of the metal–ligand interaction. The ligand L predominantly binds the metal via π donation, whereas the ligand LS prefers σ donation. Molecular orbital and quantum theory of atoms in molecules analyses as well as a comparison to a simple model system show that the covalency occurs as a result of orbital mixing and is near-degeneracy-driven in nature. This enhanced covalency, however, fails to thermodynamically compensate for the loss of strong electrostatic interaction and thus does not lead to an additional stabilization of the metal–LS complexes.

Ligand-to-metal charge transfer, orbital-mixing, chelatoaromatic effect and topological constraints control the binding of lanthanide and actinide ions to hydroxypyridinone-based decorporation agents.

Recently, Auramine O (AuO) has been projected as a fluorescent fibril sensor, and it has been claimed that AuO has an advantage over the most extensively utilized fibril marker, Thioflavin-T (ThT), owing to the presence of an additional large red-shifted emission band for AuO, which was observed exclusively for AuO in the presence of fibrillar media and not in protein or buffer media. As fibrils are very rich in β-sheet structure, a fibril sensor should be more specific toward the β-sheet structure so as to produce a large contrast between the fibril form and native protein form, for efficient detection and in vitro mechanistic studies of fibrillation. However, in this report, we show that AuO interacts significantly with the native form of bovine serum albumin (BSA), which is an all-α-helical protein and lacks the β-sheet structure, which are the hallmarks of a fibrillar structure. This strong interaction of AuO with the native form of BSA leads to a large emission enhancement of AuO for the native protein itself, and leads to a low contrast between the BSA protein and its fibrils. More importantly, the large red-shifted emission band of AuO, reported in the presence of human insulin fibrils, and which was projected as its major advantage over ThT, is not observed in the presence of BSA fibrils as well as fibrils from other proteins, such as lysozyme, human serum albumin, and β-lactoglobulin. Thus, our results provide information on the universal applicability of the distinctive and claimed-to-be-advantageous photophysical features reported for AuO in human insulin fibrils towards fibrils from other proteins. Time-resolved fluorescence measurements also support the proposition of a strong interaction of AuO with native BSA. Additionally, tryptophan emission of the protein has been explored to further elucidate the binding mechanism of AuO with native BSA. Evaluation of thermodynamic parameters revealed that the binding of AuO with native BSA involved positive enthalpy and entropy changes, suggesting dominant contributions from hydrophobic and electrostatic interactions toward the association of AuO with native BSA. Molecular docking calculations have been performed to identify the principal binding location of AuO in native BSA.

Small-angle neutron scattering (SANS) studies were carried out to compare the aggregation behavior of 1.1 M solutions of tributyl phosphate (TBP) and N,N-dihexyl octanamide (DHOA) dissolved in different deuterated diluents, viz., n-dodecane, chloroform, and benzene, during the extraction of Th(IV) from nitric acid medium. The scattering data was treated using the Baxter sticky spheres model. The third phase formed in the case of DHOA displayed higher aggregation tendency compared to that of TBP. These studies have demonstrated that the nature of the diluents plays an important role in the aggregation behavior of the extracted species (reverse micelles). No third phase was observed in the case of chlorinated and aromatic diluents like chloroform and benzene during the extraction of Th(IV) from nitric acid medium. Theoretical calculations were also performed to gain insights into the binding of thorium nitrate with TBP and DHOA models. These calculations suggest that two to three molecules of both DHOA and TBP strongly coordinate to Th(NO3)4. It is noted that the highly charged Th(IV) cations are screened by nitrates and extractants which enables the interaction of second unit of such complex through noncovalent interactions.

2-(4'-Pyridyl)benzimidazole (4PBI) can exist in several states of protonation, having three basic nitrogen atoms. The equilibria involving these states, in ground as well as in excited states, are found to be affected significantly by cyclodextrins (CDs). The formation of inclusion complexes of this compound with all three varieties of cyclodextrins is observed to be more favorable at pH 9 than at pH 4, due to the predominance of the neutral form of dye at pH 9. The binding affinity of 4PBI to CDs is found to be governed by two factors: (i) the size of the host and (ii) the mode of insertion of 4PBI. We find that, for the host with a smaller cavity (α-CD), insertion of the dye with a pyridyl face is favored, whereas, for γ-CD, the preference is shifted toward the benzimidazole face of the dye. For β-CD, the binding affinity of the dye is maximum due to perfect cavity matching with the guest. A combination of steric factor and hydrogen bonding interaction is found to be responsible for modulation of the protonation-deprotonation equilibria of the guest molecule in the inclusion complex. Surprisingly, a protonated form is found to be promoted upon inclusion in cyclodextrins, under certain conditions. This is an unusual behavior and has been rationalized by prototropism involving the hydroxyl protons of cyclodextrin molecules.

Achieving an efficient separation of chemically similar Am(3+)/Eu(3+) pair in high level liquid waste treatment is crucial for managing the long-term nuclear waste disposal issues. The use of sophisticated supramolecules in a rigid framework could be the next step toward solving the long-standing problem. Here, we have investigated the possibility of separating Am(3+)/Eu(3+) pair with cucurbit-[5]-uril (CB[5]), a macrocycle from the cucurbit-[n]-uril family, using relativistic density functional theory (DFT) based calculations. We have explored the structures, binding, and energetics of metal-CB[5] complexation processes with and without the presence of counterions. Our study reveals an excellent selectivity of Eu(3+) over Am(3+) with CB[5] (ion exchange free energy, ΔΔGAm/Eu > 10 kcal mol(-1)). Both metals bind with the carbonyl portals via μ(5) coordination arrangement with the further involvement of three external water molecules. The presence of counterions, particularly nitrate, inside the hydrophobic cavity of CB[5], induces a cooperative cation-anion binding, resulting in enhancement of metal binding at the host. The overall binding process is found to be entropy driven resembling the recent experimental observations (Rawat et al. Dalton Trans. 2015, 44, 4246-4258). The optimized structural parameters for Eu(3+)-CB[5] complexes are found to be in excellent agreement with the available experimental information. To rationalize the computed selectivity trend, electronic structures are further scrutinized using energy decomposition analysis (EDA), quantum theory of atom in molecules (QTAIM), Mülliken population analysis (MPA), Nalewajski-Mrojek (NM) bond order, and molecular orbital analyses. Strong electrostatic ion-dipole interaction along with efficient charge transfer between CB[5] and Eu(3+) outweighs the better degree of covalency between CB[5] and Am(3+) leading to superior selectivity of Eu(3+) over Am(3+).

Designing new and innovative receptors for the selective binding of radionuclides is central to nuclear waste management processes. Recently, a new multi-topic ion-pair receptor was reported which binds a variety of cesium salts. Due to the large size of the receptor, quantum chemical calculations on the full ion-pair receptors are restricted, thus the binding mechanisms are not well understood at the molecular level. We have assessed the binding strengths of various cesium salts to the recently synthesized multi-topic ion-pair receptor molecule using density functional theory based calculations. Our calculations predict that the binding of cesium salts to the receptor predominantly occurs via the cooperative binding mechanism. Cesium and the anion synergistically assist each other to bind favorably inside the receptor. Energy decomposition analysis on the ion-pair complexes shows that the Cs salts are bound to the receptor mainly through electrostatic interactions with small contribution from covalent interactions for large ionic radius anions. Further, QTAIM analysis characterizes the importance of different inter-molecular interactions between the ions and the receptor inside the ion-pair complexes. The role of the crystallographic solvent molecule contributes significantly by ~10 kcal mol(-1) to the overall binding affinities which is quite significant. Further, unlike the recent molecular mechanics (MM) calculations, our calculated binding affinity trends for various Cs ion-pair complexes (CsF, CsCl and CsNO3) are now in excellent agreement with the experimental binding affinity trends.

Straight chain amide N,N-dihexyloctanamide (DHOA) has been found to be a promising alternative extractant to tri-n-butyl phosphate (TBP) for the reprocessing of irradiated uranium- and thorium-based fuels. Unlike TBP, DHOA displays preferential extraction of Pu(IV) over U(VI) at higher acidities (≥3 M HNO3) and poor extraction at lower acidities. Density functional theory (DFT) based calculations have been carried out on the structures and relative binding energies of U(VI) and Pu(IV) with the extractant molecules. These calculations suggest that the differential hardness of the two extractants is responsible for the preferential binding/complexation of TBP to uranyl, whereas the softer DHOA and the bulky nature of the extractant lead to stronger binding/complexation of DHOA to Pu(IV). In conjunction with quantum chemical calculations, small angle neutron scattering (SANS) measurements have also been performed for understanding the stoichiometry of the complex formed that leads to relatively lower extraction of Th(IV) (a model for Pu(IV)) as compared to U(VI) using DHOA and TBP as the extractants. The combined experimental and theoretical studies helped us to understand the superior complexation/extraction behavior of Pu(IV) over U(VI) with DHOA.