The objective of this study was to investigate the effects of silencing the TT8 and HB12 genes on the nutritive profiles and in vitro gas production of alfalfa in relation to the spectral molecular structures of alfalfa. TT8-silenced (TT8i, n = 5) and HB12-silenced (HB12i, n = 11) alfalfa were generated by RNA interference (RNAi) and grown with nontransgenic wild type controls (WT, n = 4) in a greenhouse. Alfalfa plants were harvested at early-to-mid vegetative stage. Samples were analyzed for their chemical compositions, CNCPS fractions, and in vitro gas production. Correlations and regressions of the nutritional profiles and in vitro gas production with the molecular spectral structures were also determined. The results showed that the transformed alfalfa had higher digestible fiber and lower crude protein with higher proportions of indigestible protein than WT. HB12 RNAi had lower gas production compared with those of the others. Some chemical, CNCPS, and gas-production profiles were closely correlated with spectral structures and could be well predicted from spectral parameters. In conclusion, the RNAi silencing of TT8 and HB12 in alfalfa altered the chemical, CNCPS and gas-production profiles of alfalfa, and such alterations were closely correlated with the inherent spectral structures of alfalfa.

Alfalfa (Medicago sativa L.) is an important legume forage crop. However, its genetic improvement for salt tolerance is challenging, as alfalfa’s response to salt stress is genetically and physiologically complex. A review was made to update the knowledge of morphological, physiological, biochemical, and genetic responses of alfalfa plants to salt stress, and to discuss the potential of applying modern plant technologies to enhance alfalfa salt-resistant breeding, including genomic selection, RNA-Seq analysis, and cutting-edge Synchrotron beamlines. It is clear that alfalfa salt tolerance can be better characterized, genes conditioning salt tolerance be identified, and new marker-based tools be developed to accelerate alfalfa breeding for salt tolerance.

Sainfoin (Onobrychis viciifolia Scop.) is a perennial forage legume that has received renewed interest in western Canada because of its desirable forage characteristics. The objective of this review is to summarize previous studies on the agronomy, forage yield, nutritive value, seed characteristics, and diseases and pests of sainfoin. In addition, the review also focuses on the genetic diversity and registered cultivars of sainfoin and their potential use in temperate grasslands. Past studies have reported that sainfoin has a high nutritive value, and high voluntary intake and palatability to grazing animals. In western Canada, dry matter (DM) yield of sainfoin is 80%–95% that of alfalfa (Medicago sativa L.). Unlike other legumes such as alfalfa, sainfoin does not cause bloat in grazing animals due to the presence of condensed tannins. Sainfoin is suitable for monoculture or binary mixtures with either grasses or alfalfa. Genetic diversity studies revealed that sainfoin germplasm generally has high variation within populations. Genetic variation among plants provides an opportunity to develop improved cultivars with desirable characteristics. However, compared with the other forage legumes, sainfoin is still an underdeveloped forage crop with few cultivars being available in western Canada. New sainfoin cultivars with high DM yield and persistence under regional growing conditions are required.

Schellenberg, M. P, Biligetu, B. and Iwaasa, A. D. 2012. Species dynamic, forage yield, and nutritive value of seeded native plant mixtures following grazing. Can. J. Plant Sci. 92: 699–706. There is increasing interest in native plants of North America for rangeland reseeding in the semiarid regions of western Canada. However, there is limited information available on forage yield, nutritive value and response to grazing of seeded native plant mixture. The objective of this study was to compare foliar cover, forage yield, and nutritive value of two different native plant mixtures under grazing. In 2001–2004, a study was initiated on Orthic Brown Chernozemic (Aridic Haploboroll) soil near Swift Current (lat. 50°25'N, long. 107°44'W), Canada. The experimental design was a randomized complete block with a full factorial arrangement of seed mixtures (7 species and 14 species) and stocking rates (1.3 and 2.7 animal units ha−1) with four replications of each treatment combination. The 7-species mixture produced more forage than the 14-species mixture in July, August, and September of all study years. The 7-species mixture, however, had lower crude protein than the 14-species mixture in August and September in 2002 and 2003. Neutral detergent fiber and acid detergent fiber concentrations were generally similar between the two mixtures for July, August, and September sampling for all 3 yr. Foliar cover of awned wheatgrass [(Elymus trachycaulus (Link) Gould & Shin. ssp subsecundus (Link) A. & D. Love.] and slender wheatgrass [Elymus trachycaulus (Link) Gould subsp. trachycaulus] was higher in the 7-species mixture than the 14-species mixture, but foliar cover of other species was similar between the two mixtures. Shrub species were rarely observed in the stand at any year. Higher stocking rate decreased foliar cover of slender wheatgrass and weeds, but foliar cover of other species was similar between the two stocking rates. Based on the results, a seed mixture of native cool-season grasses may be more productive than a combination of native warm- and cool-season grasses under semiarid region of western Canada, but inclusion of warm-season grasses could improve nutritive value by increasing protein content in the late summer months.

Molecular characterization of unsequenced plant species with complex genomes is now possible by genotyping-by-sequencing (GBS) using recent next generation sequencing technologies. This study represents the first use of GBS application to sample genome-wide variants of crested wheatgrass [Agropyron cristatum (L.) Gaertn.] and assess the genetic diversity present in 192 genotypes from 12 tetraploid lines. Bioinformatic analysis identified 45,507 single nucleotide polymorphism (SNP) markers in this outcrossing grass species. The model-based Bayesian analysis revealed four major clusters of the samples assayed. The diversity analysis revealed 15.8% of SNP variation residing among the 12 lines, and 12.1% SNP variation present among four genetic clusters identified by the Bayesian analysis. The principal coordinates analysis and dendrogram were able to distinguish four lines of Asian origin from Canadian cultivars and breeding lines. These results serve as a valuable resource for understanding genetic variability, and will aid in the genetic improvement of this outcrossing polyploid grass species for forage production. These findings illustrate the potential of GBS application in the characterization of non-model polyploid plants with complex genomes.

Sainfoin (Onobrychis viciifolia) is a forage legume of renewed interest in western Canada, with equally weighted advantages and disadvantages. In agronomic attributes, sainfoin is, at best, equal in yield, crude protein content and persistence to alfalfa (Medicago sativa). Sainfoin is equally or more palatable than alfalfa to ruminants, with comparable levels of animal productivity per unit forage consumed. The advantages it has compared to alfalfa include the following: (a) mitigation of frothy bloat; (b) reduced ammonia emissions (more faecal nitrogen (N) and less urinary N); (c) equal or better N retention by ruminants; and (d) anthelmintic protection from intestinal parasites. These advantages may be attributed to the presence of condensed tannins (CT), in legumes such as sainfoin. Emphasis on agronomic characteristics in breeding programmes appears to have led to the inadvertent reduction in the efficacy of CT characteristics. Persistence of sainfoin appears to be dependent on minimal pressure from competing plants, harvest or grazing, and good growth conditions from mid‐summer into fall, allowing for adequate root reserves for survival. It is possible that judicious use of glyphosate in late season might lessen competition in that critical period as sainfoin is more glyphosate‐tolerant than alfalfa. Otherwise, sainfoin may be best considered a short‐lived forage and best adapted for early season harvest or grazing to eliminate the risk of bloat.

Molecular plant breeding with the aid of molecular markers has played an important role in modern plant breeding over the last two decades. Many marker-based predictions for quantitative traits have been made to enhance parental selection, but the trait prediction accuracy remains generally low, even with the aid of dense, genome-wide SNP markers. To search for more accurate trait-specific prediction with informative SNP markers, we conducted a literature review on the prediction issues in molecular plant breeding and on the applicability of an RNA-Seq technique for developing function-associated specific trait (FAST) SNP markers. To understand whether and how FAST SNP markers could enhance trait prediction, we also performed a theoretical reasoning on the effectiveness of these markers in a trait-specific prediction, and verified the reasoning through computer simulation. To the end, the search yielded an alternative to regular genomic selection with FAST SNP markers that could be explored to achieve more accurate trait-specific prediction. Continuous search for better alternatives is encouraged to enhance marker-based predictions for an individual quantitative trait in molecular plant breeding.

Sainfoin (Onobrychis viciifolia Scop.) is a bloat‐free, perennial forage legume adapted to the northern temperate regions of the world. This study was carried out to evaluate phenotypic variation and nutritive value of 38 sainfoin accessions from 21 different countries. A field trial was established in 2014 using a randomized complete block design with four replications near Saskatoon, Canada, with data collected in 2015 and 2016. Analysis of variance revealed significant (p < 0.05) differences among sainfoin accessions for winter survival, dry‐matter (DM) yield, regrowth per seed yield plant, 1,000‐seed weight, plant height, growth rate, spring vigour, days to flower, stem number, crude protein (CP), neutral detergent fibre (NDF) and acid detergent fibre (ADF). Dry‐matter yield of sainfoin accessions ranged from 74 to 239 g/plant, plant height ranged from 37 to 70 cm, winter survival ranged from 20% to 94%, and seed yield ranged from 5 to 64 g/plant. Sainfoin accessions from North America produced the highest DM yield. Dry‐matter yield was positively correlated with plant height (r = 0.82), stem number (r = 0.75), growth rate (r = 0.72), spring vigour (r = 0.43), regrowth (r = 0.30), 1,000‐seed weight (r = 0.29), NDF (r = 0.71) and ADF (r = 0.74). Dry‐matter yield was negatively correlated with days to flower (r = −0.57) and CP concentration (r = −0.62). Sainfoin accessions were grouped into three main groups according to their agro‐morphological traits and nutritive value. Several promising sainfoin accessions have been identified to select for high forage yield and high winter survival in the cold climatic zone of temperate grassland.