Abstract. The Arctic is a water-rich region, with freshwater systems covering about 16 % of the northern permafrost landscape. Permafrost thaw creates new freshwater ecosystems, while at the same time modifying the existing lakes, streams, and rivers that are impacted by thaw. Here, we describe the current state of knowledge regarding how permafrost thaw affects lentic (still) and lotic (moving) systems, exploring the effects of both thermokarst (thawing and collapse of ice-rich permafrost) and deepening of the active layer (the surface soil layer that thaws and refreezes each year). Within thermokarst, we further differentiate between the effects of thermokarst in lowland areas vs. that on hillslopes. For almost all of the processes that we explore, the effects of thaw vary regionally, and between lake and stream systems. Much of this regional variation is caused by differences in ground ice content, topography, soil type, and permafrost coverage. Together, these modifying factors determine (i) the degree to which permafrost thaw manifests as thermokarst, (ii) whether thermokarst leads to slumping or the formation of thermokarst lakes, and (iii) the manner in which constituent delivery to freshwater systems is altered by thaw. Differences in thaw-enabled constituent delivery can Published by Copernicus Publications on behalf of the European Geosciences Union. J. E. Vonk et al.: Effects of permafrost thaw on Arctic aquatic ecosystemsbe considerable, with these modifying factors determining, for example, the balance between delivery of particulate vs. dissolved constituents, and inorganic vs. organic materials. Changes in the composition of thaw-impacted waters, coupled with changes in lake morphology, can strongly affect the physical and optical properties of thermokarst lakes. The ecology of thaw-impacted lakes and streams is also likely to change; these systems have unique microbiological communities, and show differences in respiration, primary production, and food web structure that are largely driven by differences in sediment, dissolved organic matter, and nutrient delivery. The degree to which thaw enables the delivery of dissolved vs. particulate organic matter, coupled with the composition of that organic matter and the morphology and stratification characteristics of recipient systems will play an important role in determining the balance between the release of organic matter as greenhouse gases (CO 2 and CH 4 ), its burial in sediments, and its loss downstream. The magnitude of thaw impacts on northern aquatic ecosystems is increasing, as is the prevalence of thaw-impacted lakes and streams. There is therefore an urgent need to quantify how permafrost thaw is affecting aquatic ecosystems across diverse Arctic landscapes, and the implications of this change for further climate warming.

Abstract. The Arctic is a water-rich region, with freshwater systems covering 16 % of the northern permafrost landscape. The thawing of this permafrost creates new freshwater ecosystems, while at the same time modifying the existing lakes, streams, and rivers that are impacted by thaw. Here, we describe the current state of knowledge regarding how permafrost thaw affects lentic and lotic systems, exploring the effects of both thermokarst (thawing and collapse of ice-rich permafrost) and deepening of the active layer (the surface soil layer that thaws and refreezes each year). Within thermokarst, we further differentiate between the effects of thermokarst in lowland areas, vs. that on hillslopes. For almost all of the processes that we explore, the effects of thaw vary regionally, and between lake and stream systems. Much of this regional variation is caused by differences in ground ice content, topography, soil type, and permafrost coverage. Together, these modifying variables determine the degree to which permafrost thaw manifests as thermokarst, whether thermokarst leads to slumping or the formation of thermokarst lakes, and the manner in which constituent delivery to freshwater systems is altered by thaw. Differences in thaw-enabled constituent delivery can be considerable, with these modifying variables determining, for example, the balance between delivery of particulate vs. dissolved constituents, and inorganic vs. organic materials. Changes in the composition of thaw-impacted waters, coupled with changes in lake morphology, can strongly affect the physical and optical properties of thermokarst lakes. The ecology of thaw-impacted systems is also likely to change, with thaw-impacted lakes and streams having unique microbiological communities, and showing differences in respiration, primary production, and food web structure that are largely driven by differences in sediment, dissolved organic matter and nutrient delivery. The degree to which thaw enables the delivery of dissolved vs. particulate organic matter, coupled with the composition of that organic matter and the morphology and stratification characteristics of recipient systems will play an important role in determining the balance between the release of organic matter as greenhouse gases (CO2 and CH4), its burial in sediments, and its loss downstream. The magnitude of thaw impacts on northern aquatic ecosystems is increasing, as is the prevalence of thaw-impacted lakes and streams. There is therefore an urgent need to address the key gaps in understanding in order to predict the full effects of permafrost thaw on aquatic ecosystems throughout the Arctic, and their consequential feedbacks to climate.

The thawing and subsidence of frozen peat mounds (palsas) in permafrost landscapes results in the formation of organic‐rich thermokarst lakes. We examined the effects of palsa degradation on CH4 and CO2 emissions by comparing thermokarst lakes at two peatland locations in subarctic Québec, Canada: in the northern discontinuous permafrost region, and in southern sporadic permafrost where palsas are more rapidly degrading. The lakes were shallow (< 3 m) but stratified at both sites, and most had anoxic bottom waters. The surface waters at both sites were supersaturated in CH4 and CO2, and to a greater extent in the southern lakes, where the surface CH4 concentrations were up to 3 orders of magnitude above air equilibrium. Concentrations of CH4 and CO2 increased by orders of magnitude with depth in the southern lakes, however these gradients were less marked or absent in the North. Strong CH4 and CO2 emissions were associated with gas ebullition, but these were greatly exceeded by diffusive fluxes, in contrast to thermokarst lakes studied elsewhere. Also unusual relative to other studies to date, the surface concentrations of both gases increased as a linear function of water column depth, with highest values over the central, deepest portion of the lakes. Radiocarbon dating of ebullition gas samples showed that the CH4 had 14C‐ages from 760 yr to 2005 yr before present, while the CO2 was consistently younger. Peatland thermokarst lakes may be an increasingly important source of greenhouse gases as the southern permafrost limit continues to shift northwards.

Permafrost thaw lakes occur in high abundance across the subarctic landscape but little is known about their limnological dynamics. This study was undertaken to evaluate the hourly, seasonal, and depth variations in oxygen concentration in three thaw lakes in northern Quebec, Canada, across contrasting permafrost regimes (isolated, sporadic, and discontinuous). All lakes were well stratified in summer despite their shallow depths (2.7-4.0 m), with hypoxic or anoxic bottom waters. Continuous automated measurements in each of the lakes showed a period of water column oxygenation over several weeks in fall followed by bottom-water anoxia soon after ice-up. Anoxic conditions extended to shallower depths (1 m) over the course of winter, beginning 18-137 d after ice formation, depending on the lake. Full water column anoxia extended over 33-75% of the annual record. There was a brief period of incomplete spring mixing with partial or no reoxygenation of the bottom waters in each lake. Conductivity measurements showed the build-up of solutes in the bottom waters, and the resultant density increase contributed to the resistance to full mixing in spring. These observations indicate the prevalence of stratified conditions throughout most of the year and underscore the importance of the fall mixing period for gas exchange with the atmosphere. Given the long duration of anoxia, subarctic thaw lakes represent an ideal environment for anaerobic processes such as methane production. The intermittent oxygenation also favors intense methanotrophy and aerobic bacterial decomposition processes.Northern landscapes underlain by permafrost (perennially frozen ground) are currently in rapid transition in response to atmospheric warming (AMAP 2012). The unfrozen surface layer (active layer) has deepened in certain regions, and the vast, ancient reserves of organic carbon stored in the permafrost have begun to be mobilized (Schuur et al. 2015). Considerable research has focused on the influence of climate warming on greenhouse gas emissions from permafrost soils (e.g., McGuire et al. 2012;Elberling et al. 2013), but the lakes on permafrost landscapes and their biogeochemical responses to climate change have only recently begun to receive close attention.Thaw lakes (thermokarst lakes and ponds) are one of the most abundant freshwater ecosystem types in the circumpolar North, with a likely total area of 2.5-3. et al. 2006). Small lakes at high northern latitudes dominate the total land-water interface (perimeter) of lakes throughout the world (Verpoorter et al. 2014), and the large total perimeter of eroding permafrost soils that surround northern thaw lakes further indicates their potential biogeochemical significance. Lakes across the circumpolar North are responding in variable ways to climate warming, with drainage, infilling or evaporation of thaw lakes in some areas, but increases in their abundance and size in others (Vincent et al. 2013). In the subarctic region of eastern Canada, the southern

Mixing regime and CO 2 availability may control cyanobacterial blooms in polymictic lakes, but the underlying mechanisms still remain unclear. We integrated detailed results from a natural experiment comprising an average-wet year (2011) and one with heat waves (2012), a long-term meteorological dataset , historical phosphorus concentrations and sedimentary pigment records, to determine the mechanistic controls of cyanobacterial blooms in a eutrophic polymictic lake. Intense warming in 2012 was associated with: 1) increased stability of the water column with buoyancy frequencies exceeding 40 cph at the surface, 2) high phytoplankton biomass in spring (up to 125 mg WW L -1 ), 3) reduced downward transport of heat and 4) depleted epilimnetic CO 2 concentrations. CO 2 depletion was maintained by intense uptake by phytoplankton (influx up to 30 mmol m -2 d -1 ) in combination with reduced, internal and external, carbon inputs during dry, stratified periods. These synergistic effects triggered bloom of buoyant cyanobacteria (up to 300 mg WW L -1 ) in the hot year. Complementary evidence from polynomial regression modelling using historical data and pigment record revealed that warming explains 78% of the observed trends in cyanobacterial biomass, whereas historical phosphorus concentration only 10% thereof. Together the results from the natural experiment and the longterm record indicate that effects of hotter and drier climate are likely to increase water column stratification and decrease CO 2 availability in eutrophic polymictic lakes. This combination will catalyze blooms of buoyant cyanobacteria.

Abstract. Peatlands extend over vast areas of the northern landscape. Within some of these areas, lakes and ponds are changing in size as a result of permafrost thawing and erosion, resulting in mobilization of the carbon-rich peatland soils. Our aims in the present study were to characterize the particle, carbon and nutrient regime of a set of thermokarst (thaw) lakes and their adjacent peatland permafrost soils in a rapidly degrading landscape in subarctic Québec, Canada, and by way of fluorescence microscopy, flow cytometry, production measurements and an in situ enrichment experiment, determine the bacterial characteristics of these waters relative to other thaw lakes and rock-basin lakes in the region. The soil active layer in a degrading palsa (peatland permafrost mound) adjacent to one of the lakes contained an elevated carbon content (51 % of dry weight), high C : N ratios (17 : 1 by mass), and large stocks of other elements including N (3 % of dry weight), Fe (0.6 %), S (0.5 %), Ca (0.5 %) and P (0.05 %). Two permafrost cores were obtained to a depth of 2.77 m in the palsa, and computerized tomography scans of the cores confirmed that they contained high concentrations (> 80 %) of ice. Upon thawing, the cores released nitrate and dissolved organic carbon (from all core depths sampled), and soluble reactive phosphorus (from bottom depths), at concentrations well above those in the adjacent lake waters. The active layer soil showed a range of particle sizes with a peak at 229 µm, and this was similar to the distribution of particles in the upper permafrost cores. The particle spectrum for the lake water overlapped with those for the soil, but extended to larger (surface water) or finer (bottom water) particles. On average, more than 50 % of the bacterial cells and bacterial production was associated with particles > 3 µm. This relatively low contribution of free-living cells (operationally defined as the < 1 µm fraction) to bacterial production was a general feature of all of the northern lakes sampled, including other thaw lakes and shallow rock-basin lakes (average ± SE of 25 ± 6 %). However, a distinguishing feature of the peatland thaw lakes was significantly higher bacterial specific growth rates, which averaged 4 to 7 times higher values than in the other lake types. The in situ enrichment experiment showed no difference between organic carbon or phosphorus enrichment treatments at day 5 relative to the control, however there was an apparent increase in bacterial growth rates between days 1 and 5 in the soil and the carbon plus phosphorus enrichments. Collectively these results indicate that particles, nutrients and carbon are released by degrading permafrost peatland soils into their associated thermokarst lakes, creating favorable conditions for production by particle-based as well as free-living aquatic bacterial communities. The reduced bacterial concentrations despite high cellular growth rates imply that there is control of their population size by loss-related factors such as grazing and vira...

Permafrost thawing and erosion results in the enrichment of northern lakes by soil organic matter. These allochthonous inputs favour bacterial decomposition and may cause the draw-down of dissolved oxygen to anoxic conditions that promote methanogenesis. Our objective in the present study was to determine the seasonal variations in dissolved oxygen in a set of permafrost peatland lakes in subarctic Quebec, Canada, and to relate these changes to metabolic rates, ice cover, and mixing. The lakes had high dissolved organic carbon concentrations, and their surface waters in summer had greenhouse gas concentrations that were up to one (CO 2 ) to three (CH 4 ) orders of magnitude above air-equilibrium values, indicating their strongly heterotrophic character. Consistent with these observations, the peatland lakes had elevated rates of bacterial production and oxygen consumption. Continuous measurements of oxygen by in situ sensors and of ice cover by automated field cameras showed that the lakes became fully anoxic shortly after freeze-up. The waters were partially reoxygenated by mixing events in spring and fall, but in one lake, the bottom waters remained anoxic throughout the year. These observations provide a foundation for subsequent biogeochemical and modelling studies of peatland thaw lakes as an abundant class of Arctic freshwater ecosystems.Key words: oxygen, permafrost, respiration, thaw lakes, thermokarst.Résumé : Le dégel et l'érosion du pergélisol entraînent l'enrichissement des lacs du Nord en raison de l'apport de matière organique de sol. Ces apports allochtones favorisent la décom-position bactérienne et peuvent causer la diminution d'oxygène dissous jusqu'à des conditions anoxiques qui aident la méthanogénèse. Notre objectif en entreprenant cette étude était de déterminer les variations saisonnières d'oxygène dissous pour un ensemble de lacs de tourbière de pergélisol dans la région subarctique du Québec, Canada, et d'établir un rapport entre ces changements et les taux métaboliques, la couverture de glace et le mélange. Les lacs avaient des concentrations élevées en carbone organique dissous et en été leurs eaux de surface avaient des concentrations en gaz à effet de serre qui étaient jusqu'à un (CO 2 ) et à trois (CH 4 ) ordres de grandeur au-dessus des valeurs d'équilibre d'air, indiquant leur caractère fortement hétérotrophe. Conformément à ces observations, les lacs de tourbière avaient des taux élevés de production bactérienne et de consommation d'oxygène. Des mesures prises en continue d'oxygène au moyen de capteurs in situ et de couverture de glace au moyen de caméras automatisées de terrain ont indiqué que les lacs devenaient entièrement anoxiques peu de temps après le gel. Les eaux ont été partiellement ré-oxygénées au printemps et à l'automne en raison de phénomènes de mélange, mais dans un des lacs, les

Abstract. Accelerating climate change and increased economic and environmental interests in permafrost-affected regions have resulted in an acute need for more directed permafrost research. In June 2014, 88 early career researchers convened to identify future priorities for permafrost research. This multidisciplinary forum concluded that five research topics deserve greatest attention: permafrost landscape dynamics, permafrost thermal modeling, integration of traditional knowledge, spatial distribution of ground ice, and engineering issues. These topics underline the need for integrated research across a spectrum of permafrost-related domains and constitute a contribution to the Third International Conference on Arctic Research Planning (ICARP III).