The embedding of the SM hypercharge into an orientifold gauge group is studied. Possible embeddings are classified, and a systematic construction of bottom-up configurations and top-down orientifold vacua is achieved, solving the tadpole conditions in the context of Gepner orientifolds. Some hypercharge embeddings are strongly preferred compared to others. Configurations with chiral antisymmetric tensors are suppressed. We find among others, genuine examples of supersymmetric SU(5), flipped SU(5), Pati-Salam and trinification vacua with no chiral exotics.

Any automorphism of the Dynkin diagram of a symmetrizable Kac-Moody algebra induces an automorphism of the algebra and a mapping between its highest weight modules. For a large class of such Dynkin diagram automorphisms, we can describe various aspects of these maps in terms of another Kac-Moody algebra, the `orbit Lie algebra'. In particular, the generating function for the trace of the map on modules, the `twining character', is equal to a character of the orbit Lie algebra. Orbit Lie algebras and twining characters constitute a crucial step towards solving the fixed point resolution problem in conformal field theory.Comment: Latex, 60 pages (extended version 63 pages), 4 uuencoded figures Formula (6.25) corrected. While this correction might be important in applications of our work, the results of the paper are not affected by it. In the present submission the "extended version" is default. In this version the corrected formula is (6.32

Recently it has been shown that string instanton effects may give rise to neutrino Majorana masses in certain classes of semi-realistic string compactifications. In this paper we make a systematic search for supersymmetric MSSM-like Type II Gepner orientifold constructions admitting boundary states associated with instantons giving rise to neutrino Majorana masses and other L-and/or B-violating operators. We analyze the zero mode structure of D-brane instantons on general type II orientifold compactifications, and show that only instantons with O(1) symmetry can have just the two zero modes required to contribute to the 4d superpotential. We however discuss how the addition of fluxes and/or possible non-perturbative extensions of the orientifold compactifications would allow also instantons with Sp(2) and U (1) symmetries to generate such superpotentials. In the context of Gepner orientifolds with MSSM-like spectra, we find no models with O(1) instantons with just the required zero modes to generate a neutrino mass superpotential. On the other hand we find a number of models in one particular orientifold of the Gepner model (2,4,22,22) with Sp(2) instantons with a few extra uncharged non-chiral zero modes which could be easily lifted by the mentioned effects. A few more orientifold examples are also found under less stringent constraints on the zero modes. This class of Sp(2) instantons have the interesting property that R-parity conservation is automatic and the flavour structure of the neutrino Majorana mass matrices has a simple factorized form.