Chlorinated ethenes are toxic groundwater contaminants. Although they can be dechlorinated by microorganisms, reductive dehalogenases, and their corrinoid cofactor, biochemical reaction mechanisms remain unsolved. This study uncovers a mechanistic shift revealed by contrasting compound-specific carbon (ε13C) and chlorine (ε37Cl) isotope effects between perchloroethene, PCE (ε37Cl = −4.0‰) and cis-dichloroethene, cis-DCE (ε37Cl = −1.5‰), and a pH-dependent shift for trichloroethene, TCE (from ε37Cl = −5.2‰ at pH 12 to ε37Cl = −1.2‰ at pH 5). Different pathways are supported also by pH-dependent reaction rates, TCE product distribution, and hydrogen isotope effects. Mass balance deficits revealed reversible and irreversible cobalamin-substrate association, whereas high-resolution mass spectrometry narrowed down possible structures to chloroalkyl and chlorovinyl cobalamin complexes. Combined experimental evidence is inconsistent with initial electron transfer or alkyl or vinyl complexes as shared intermediates of both pathways. In contrast, it supports cobalamin chlorocarbanions as key intermediates from which Cl– elimination produces vinyl complexes (explaining rates and products of TCE at high pH), whereas protonation generates less reactive alkyl complexes (explaining rates and products of TCE at low pH). Multielement isotope effect analysis holds promise to identify these competing mechanisms also in real dehalogenases, microorganisms, and even contaminated aquifers.

Chlorinated ethenes (CEs) such as perchloroethylene, trichloroethylene and dichloroethylene are notorious groundwater contaminants. Although reductive dehalogenation is key to their environmental and engineered degradation, underlying reaction mechanisms remain elusive. Outer-sphere reductive single electron transfer (OS-SET) has been proposed for such different processes as Vitamin B-dependent biodegradation and zerovalent metal-mediated dehalogenation. Compound-specific isotope effect (C/C, Cl/Cl) analysis offers a new opportunity to test these hypotheses. Defined OS-SET model reactants (CO radical anions, S-doped graphene oxide in water) caused strong carbon (ε = -7.9‰ to -11.9‰), but negligible chlorine isotope effects (ε = -0.12‰ to 0.04‰) in CEs. Greater chlorine isotope effects were observed in CHCl (ε = -7.7‰, ε = -2.6‰), and in CEs when the exergonicity of C-Cl bond cleavage was reduced in an organic solvent (reaction with arene radical anions in glyme). Together, this points to dissociative OS-SET (SET to a σ* orbital concerted with C-Cl breakage) in alkanes compared to stepwise OS-SET (SET to a π* orbital followed by C-Cl cleavage) in ethenes. The nonexistent chlorine isotope effects of chlorinated ethenes in all aqueous OS-SET experiments contrast strongly with pronounced Cl isotope fractionation in all natural and engineered reductive dehalogenations reported to date suggesting that OS-SET is an exception rather than the rule in environmental transformations of chlorinated ethenes.

To use compound-specific isotope analysis for confidently assessing organic contaminant attenuation in the environment, isotope fractionation patterns associated with different transformation mechanisms must first be explored in laboratory experiments. To deliver this information for the common groundwater contaminant chloroform (CF), this study investigated for the first time both carbon and chlorine isotope fractionation for three different engineered reactions: oxidative C-H bond cleavage using heat-activated persulfate, transformation under alkaline conditions (pH ∼ 12) and reductive C-Cl bond cleavage by cast zerovalent iron, Fe(0). Carbon and chlorine isotope fractionation values were -8 ± 1‰ and -0.44 ± 0.06‰ for oxidation, -57 ± 5‰ and -4.4 ± 0.4‰ for alkaline hydrolysis (pH 11.84 ± 0.03), and -33 ± 11‰ and -3 ± 1‰ for dechlorination, respectively. Carbon and chlorine apparent kinetic isotope effects (AKIEs) were in general agreement with expected mechanisms (C-H bond cleavage in oxidation by persulfate, C-Cl bond cleavage in Fe(0)-mediated reductive dechlorination and E1 elimination mechanism during alkaline hydrolysis) where a secondary AKIE (1.00045 ± 0.00004) was observed for oxidation. The different dual carbon-chlorine (ΔδC vs ΔδCl) isotope patterns for oxidation by thermally activated persulfate and alkaline hydrolysis (17 ± 2 and 13.0 ± 0.8, respectively) vs reductive dechlorination by Fe(0) (8 ± 2) establish a base to identify and quantify these CF degradation mechanisms in the field.