Metal nanoparticles hold promise for many scientific and technological applications, such as chemical and biological sensors, vehicles for drug delivery, and subdiffraction limit waveguides. To fabricate such devices, a method to position particles in specific locations relative to each other is necessary. Nanoparticles tend to spontaneously aggregate into ordered two-and three-dimensional assemblies, but achieving onedimensional structures is less straightforward. Because of their symmetry, nanoparticles lack the ability to bond along specific directions. Thus, the technological potential of nanoparticles would be greatly enhanced by the introduction of a method to break the interaction symmetry of nanoparticles, thus inducing valency and directional interparticle interactions.When a nanoparticle is coated with a mixture of two different ligands, the ligands have been shown to phase-separate into ordered domains encircling or spiraling around the core. Topological constraints inherent in assembling two-dimensional vectors (e.g., ligands) onto a sphere (the core of the nanoparticle) dictate the necessary formation of two diametrically opposed defect points within the ligand shell. The molecules at these points are not optimally stabilized by intermolecular interactions and thus these sites are highly reactive. By functionalizing the polar singularities with a third type of molecule, we generate divalent nanoparticles with "chemical handles" that can be used to direct the assembly of the particles into chains. For example, taking inspiration from the wellknown interfacial polymerization synthesis of nylon, we place carboxylic acid terminated molecules at the polar defect points and join the newly bifunctional nanoparticles into chains by reacting them with 1,6-diaminohexane through an interfacial reaction.Furthermore, we perform a full kinetic and thermodynamic characterization of the molecularly defined polar defect points. We demonstrate that the rate of place-exchange at these points is significantly faster than it is elsewhere in the ligand shell. We also determine the equilibrium constant and standard free energy of the place-exchange reaction at the polar defect sites and demonstrate that the reaction is strongly affected by the molecular environment, i.e. the composition of the ligand shell.
Deterministic lateral displacement (DLD) pillar arrays are an efficient technology to sort, separate and enrich micrometre-scale particles, which include parasites, bacteria, blood cells and circulating tumour cells in blood. However, this technology has not been translated to the true nanoscale, where it could function on biocolloids, such as exosomes. Exosomes, a key target of 'liquid biopsies', are secreted by cells and contain nucleic acid and protein information about their originating tissue. One challenge in the study of exosome biology is to sort exosomes by size and surface markers. We use manufacturable silicon processes to produce nanoscale DLD (nano-DLD) arrays of uniform gap sizes ranging from 25 to 235 nm. We show that at low Péclet (Pe) numbers, at which diffusion and deterministic displacement compete, nano-DLD arrays separate particles between 20 to 110 nm based on size with sharp resolution. Further, we demonstrate the size-based displacement of exosomes, and so open up the potential for on-chip sorting and quantification of these important biocolloids.
Graphical Abstract Highlights d The exRNA Atlas provides access to human exRNA profiles and web-accessible tools d Atlas analysis reveals six exRNA cargo types present across five human biofluids d Five of the cargo types associate with specific vesicular and non-vesicular carriers d These findings and resources empower studies of extracellular RNA communication An extracellular RNA atlas from five human biofluids (serum, plasma, cerebrospinal fluid, saliva, and urine) reveals six extracellular RNA cargo types, including both vesicular and nonvesicular carriers. SUMMARY To develop a map of cell-cell communication mediated by extracellular RNA (exRNA), the NIH Extracellular RNA Communication Consortium created the exRNA Atlas resource (https://exrna-atlas.org). The Atlas version 4P1 hosts 5,309 exRNA-seq and exRNA qPCR profiles from 19 studies and a suite of analysis and visualization tools. To analyze variation between profiles, we apply computational deconvolution. The analysis leads to a model with six exRNA cargo types (CT1, CT2, CT3A, CT3B, CT3C, CT4), each detectable in multiple biofluids (serum, plasma, CSF, saliva, urine). Five of the cargo types associate with known vesicular and non-vesicular (lipoprotein and ribonucleoprotein) exRNA carriers. To validate utility of this model, we re-analyze an exercise response study by deconvolution to identify physiologically relevant response pathways that were not detected previously.To enable wide application of this model, as part of the exRNA Atlas resource, we provide tools for deconvolution and analysis of user-provided case-control studies.
Here, we report on an aqueous room temperature synthesis method for the production of gold nanoparticles that have a number (>4) of branches ultimately resembling the shape of sea urchins. The particles are synthesized in the presence of water soluble thiol terminated molecules, used as ligand molecules. These nano-urchins are produced in high yield and exhibit unique optical properties. The thiolated ligands stabilize the particles, making it possible to dry them and store them for days. When redissolved, the particles show some aggregation but not a loss in shape; their extinction spectrum shows a shift in the plasmon resonance from 585 to 622 nm together with a peak broadening. Large local electromagnetic (EM) field enhancements are expected near the sharp featured branches of the nano-urchins. Finite difference time-domain (FDTD) calculations performed on a nanoparticle with four branches show enhancements of the light intensity relative to the incident field of approximately 3000-fold. We reason that these particles will find applications as materials for surface enhanced Raman scattering (SERS).
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