Focusing on the recent literature (since 2000), this review outlines the main synthetic approaches for the preparation of 5'-mono-, 5'-di-, and 5'-triphosphorylated nucleosides, also known as nucleotides, as well as several derivatives, namely, cyclic nucleotides and dinucleotides, dinucleoside 5',5'-polyphosphates, sugar nucleotides, and nucleolipids. Endogenous nucleotides and their analogues can be obtained enzymatically, which is often restricted to natural substrates, or chemically. In chemical synthesis, protected or unprotected nucleosides can be used as the starting material, depending on the nature of the reagents selected from P(III) or P(V) species. Both solution-phase and solid-support syntheses have been developed and are reported here. Although a considerable amount of research has been conducted in this field, further work is required because chemists are still faced with the challenge of developing a universal methodology that is compatible with a large variety of nucleoside analogues.

In order to study the influence of substitutions at the a and p carbon atoms on the stability of the S-NO bond, water-soluble thionitrites RSNO have been synthesized by nitrosation of cysteamine and mercaptoethanol derivatives and characterized. 'H and 13C NMR spectroscopies have proven to be excellent probes for the nitrosation of thiols. In water, at physiological pH, the compounds decomposed into nitric oxide NO and the corresponding disulfides. The rate at which NO was released was very sensitive to modifications at the a and /3 carbon atoms. Tertiary thionitrites were more stable than primary thionitrites. The /3-substituents decreased the rates of decomposition in the following order: OH > NHCOCH3 > NH3+. S-Nitrosocysteamine derivatives were greatly stabilized at low pH. The compounds described here might be convenient and useful as vehicles for spontaneous generation of nitric oxide in biological systems, at rates that can be finely tuned and controlled over a wide range. @ (3) (a) Maragos, C. M.; Morley, D.; Wink, D. A.; Dunams, T. M.; Saavedra, J. E.; Hoffman, A.; Bove, A. A.; Isaac, L.; Hrabie, J . A.; Keefer, L. K. J . Med. Chem. 1991,34,3242-3247. (b) Saavedra, J. E.; Dunams, T. M.; Flippen-Anderson, J. L.; Keefer, L. K. J. O g . Chem. 1992, 57, 6134-6138.0022-326319411959-7019$04.50/0 ing disulfide RSSR and nitric oxide.4 However, most stable S-nitroso compounds, such as tert-butyl and trityl thionitrite and other alkylthionitrites, are completely insoluble in water.5 Furthermore, water-soluble thionitrites are generally much too unstable and thus too difficult to prepare and purify. Thus, only few of these compounds, such as cysteine and glutathione derivatives, have been isolated.6 The indefinite stability of S-nitroso-N-acetyl-D,L-penicillamine (SNAP) as green crystals allows analysis by X-ray crystallography.' SNAP has actually been used as a generator of NO in biological studies. Finally, the cysteine residues of a number of proteins can be nitrosated.a The stability of S-nitrosocysteines within a polypeptide chain is remarkable compared to that of free S-nitro~ocysteine.~In the present report we describe the preparation and the characterization of new thionitrites from cysteamine and mercaptoethanol derivatives. We have studied their stabilities in aqueous solutions as a function of pH and shown that they spontaneously generate nitric oxide at physiological pH. Their properties make them convenient and useful NO generators in water.

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Thionitrites are spontaneous nitric oxide (NO) donors in neutral aqueous solutions. Consequently, they inhibit ribonucleotide reductase, the rate-limiting enzyme in DNA synthesis, from Escherichia coli and murine adenocarcinoma TA3 cells. They also inhibit tumor cell proliferation. Reaction of thionitrites with protein R1, the large subunit, results in the nitrosation of cysteines, as shown from the formation of a chromophore with a characteristic absorption at 340 nm. EPR spectroscopy both on whole murine R2-overexpressing L1210 cells and on the pure protein showed that the tyrosyl radical of protein R2, the small subunit, reversibly couples to the NO radical, presumably leading to nitrosotyrosine adducts. Both molecular events might be at the origin of the inhibition of ribonucleotide reductase by NO, since a number of cysteines and the tyrosyl radical are essential for catalysis. These results identify NO donors as a new class of inhibitors of ribonucleotide reductase with potential applications as anticancer or antiviral chemotherapy agents.

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A method was developed for the quantification of araCTP, CTP and dCTP in a human follicular lymphoma cell line. This method involves solid phase extraction (SPE) using a weak anion-exchanger (WAX) cartridge, a porous graphitic carbon high-performance liquid chromatography (HPLC) column separation, and tandem mass spectrometry (MS/MS) detection. By using a triple quadrupole mass spectrometer operating in negative ion multiple reaction monitoring (MRM) mode, the method was able to achieve a lower limit of quantification (LLOQ) of 0.1 microg mL(-1) for araCTP and of 0.01 microg mL(-1) for both CTP and dCTP. The method was validated and used to determine the amount of araCTP, CTP and dCTP formed after incubation of araC and an araCMP prodrug in the human follicular lymphoma cell line RL.

L-Nucleosides comprise a new class of antiviral and anticancer agents that are converted in vivo by a cascade of kinases to pharmacologically active nucleoside triphosphates. The last step of the cascade may be catalyzed by 3-phosphoglycerate kinase (PGK), an enzyme that has low specificity for nucleoside diphosphate (NDP): NDP + 1,3-bisphosphoglycerate <--> NTP + 3-phosphoglycerate. Here we compared the kinetics of the formation of the complexes of human PGK with d- and its mirror image l-ADP and the effect of 3-phosphoglycerate (PG) on these by exploiting the fluorescence signal of PGK that occurs upon its interaction with nucleotide substrate. Two types of experiment were carried out: equilibrium (estimation of dissociation constants) and stopped-flow (transient kinetics of the interactions). We show that under our experimental conditions (buffer containing 30% methanol, 4 degrees C) PGK binds d- and l-ADP with similar kinetics. However, whereas PG increased the dissociation rate constant for d-ADP by a factor of 8-which is a kinetic explanation for "substrate antagonism"-PG had little effect on this constant for l-ADP. We explain this difference by a molecular modeling study that showed that the beta-phosphates of d- and l-ADP have different orientations when bound to the active site of human PGK. The difference is unexpected because l-ADP is almost as catalytically competent as d-ADP [ Varga, A. et al. (2008) Biochem. Biophys. Res. Commun. 366, 994-1000].

l-Nucleoside analogues such as lamivudine are active for treating viral infections. Like d-nucleosides, the biological activity of the l-enantiomers requires their stepwise phosphorylation by cellular or viral kinases to give the triphosphate. The enantioselectivity of NMP kinases has not been thoroughly studied, unlike that of deoxyribonucleoside kinases. We have therefore investigated the capacity of l-enantiomers of some natural (d)NMP to act as substrates for the recombinant forms of human uridylate-cytidylate kinase, thymidylate kinase and adenylate kinases 1 and 2. Both cytosolic and mitochondrial adenylate kinases were strictly enantioselective, as they phosphorylated only d-(d)AMP. l-dTMP was a substrate for thymidylate kinase, but with an efficiency 150-fold less than d-dTMP. Both l-dUMP and l-(d)CMP were phosphorylated by UMP-CMP kinase although much less efficiently than their natural counterparts. The stereopreference was conserved with the 2′-azido derivatives of dUMP and dUMP while, unexpectedly, the 2′-azido-d-dCMP was a 4-fold better substrate for UMP-CMP kinase than was CMP. Docking simulations showed that the small differences in the binding of d-(d)NMP to their respective kinases could account for the differences in interactions of the l-isomers with the enzymes. This in vitro information was then used to develop the in vivo activation pathway for l-dT.