Translocations of Baltic whitefish (Coregonus sp.) into Austrian Alpine lakes have created ‘artificial hybrid zones’, threatening the genetic integrity of native lineages. We evaluate the genetic structure of Coregonus in Austrian lakes and characterize hybridization and introgression between native and introduced lineages. Fifteen populations (N= 747) were assessed for allelic variation at eight microsatellite loci and a reduced set (N= 253) for variation across two mtDNA genes (cyt b and NADH-3). Bayesian approaches were used to estimate individual admixture proportions (q-values) and classify genotypes as native, introduced or hybrids. q-value distributions varied among populations highlighting differential hybridization and introgression histories. Many lakes revealed a clear distinction between native and introduced genotypes despite hybridization, whereas some locations revealed hybrid swarms. Genetic structure among lakes was congruent with morphological divergence and novelty raising speculation of multiple taxa, including a population south of the Alps, outside the putative native range of Coregonus. Although statistically congruent with inferences based on nuclear markers, mitochondrial haplotype data was not diagnostic with respect to native and non-native lineages, supporting that the Alpine region was colonized post-glacially by an admixture of mtDNA lineages, which coalesce >1 Ma. Mechanisms promoting or eroding lineage isolation are discussed, as well as a high potential to conserve native Alpine lineages despite the extensive historical use of introduced Baltic stocks.

Based on the reconstructed native fish communities all natural Austrian lakes >50 ha (n = 43) were classified into four groups using cluster analysis methods. Sentinel species (i.e. species with highest discriminating value for lake types and characteristic for a specific lake group) and type specific fish species (accompanying species with additional value for characterising lake groups) were defined by a newly developed index and by similarity analysis. The first group included 16 lakes of high altitude, small surface area and low fish species number with arctic char as a sentinel species. The second group (n = 10) was characterized by intermediate altitude, large surface area and high maximum water depth with the minnow as sentinel species. The third group contained 14 lakes with low maximum water depths and a long retention time. For this group the bleak was found as a sentinel species. The lakes of the eastern part of Austria represented the last group (n = 3) and were characterized by low altitude and very shallow water depth with pike-perch as a sentinel species.

The fish communities of all Austrian natural lakes (n ¼ 43) larger than 50 ha in surface area were assessed and the historical fish communities in c. 1850 were reconstructed. During the last 150 years, the fish communities of Austrian lakes have altered: in 49% of lakes at least one indigenous fish species, usually sensitive or small-bodied taxa, is now missing. Conversely, in all but one of the 43 lakes the number of fish species has increased. In particular, certain fish species of interest to angling and commercial fisheries now occur in more lakes. Generalised linear models were used to identify variables that would explain the loss of fish species using categories of lake use (ranking score). The category human population density around the lakes seemed to be one of the main causes for the loss of fish species. K E Y

We hypothesized that there is spatiotemporal genetic (mtDNA) structure of native and introduced larval whitefish (Coregonus sp.) in two Austrian lakes (Traunsee and Hallstättersee). Larval whitefish were sampled from 12 sites in each lake and screened for variation in the mtDNA NADH-1 gene. Based on the sequencing of adult fish together with existing GenBank sequences, an RFLP protocol was developed to assign haplotypes from larval samples into one of two divergent lineages. All but one site (pelagic) in Traunsee contained both haplotypes, thus there was no support for spatial segregation of mtDNA groups in that lake. However, weekly sampling from December to May in Traunsee revealed a temporal pattern, with the native haplotypes dominating in December and January before the appearance of the introduced Baltic clade. In Hallstättersee, only three of the 12 sites sampled revealed haplotypes from the introduced clade and thus spatial segregation seems operative on that lake. Our results imply that differences in the spawning ecology of the two groups maintain sufficient reproductive isolation to be reflected in distinct larval occurrence in space and time highly consistent with genetic differences on the mtDNA level. If the two lineages were highly introgressed, we would expect to find little or no correspondence between spatio-temporal patterns in larval distribution and the differentiated mtDNA lineages.

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