Advanced carbon microelectrodes are being developed for the in vivo detection of neurotransmitters, such as dopamine (DA), including many carbon nanotube (CNT) based electrodes. Our prior simulations of DA and dopamine-o-quinone (DOQ) on pristine, flat graphene showed rapid surface diffusion for all adsorbed species, but it is not known how CNT surfaces affect dopamine adsorption and surface diffusivity. In this work, we use molecular dynamics simulations to investigate the adsorbed structures and surface diffusion dynamics of DA and DOQ on CNTs of varying curvature and helicity. In addition, we study DA dynamics in a groove between two aligned CNTs to model the spatial constraints at the junctions within CNT assemblies. We find that the adsorbate diffusion on a solvated CNT surface depends upon curvature. However, this effect cannot be attributed to changes in the surface energy roughness because the lateral distributions of the molecular adsorbates are similar across curvatures, diffusivities on zigzag and armchair CNTs are indistinguishable, and the curvature dependence disappears in the absence of solvent. Instead, adsorbate diffusivities correlate with the vertical placement of the adsorbate's moieties, its tilt angle, its orientation along the CNT axis, and the number of waters in its first hydration shell -- all of which will influence its effective hydrodynamic radius. Finally, DA diffuses into and remains in the groove between a pair of aligned and solvated CNTs, enhancing diffusivity along the CNT axis. These first studies of surface diffusion on a CNT electrode surface are important for understanding the changes in diffusion dynamics of dopamine on nanostructured carbon electrode surfaces.
Carbon microelectrodes enable in vivo detection of neurotransmitters, and new electrodes are being developed to optimize the carbon surface. However, the work is mainly empirical and there have not been corresponding theoretical studies using molecular-level simulations of the diffusion and orientation of neurotransmitters near these surfaces. Here, we employ molecular dynamics simulations to investigate in atomistic detail the surface diffusion of dopamine (DA), its oxidation product dopamine-o-quinone (DOQ), and their protonated forms on the pristine basal plane of flat graphene. All DA species rapidly adsorb to the surface and remain adsorbed for the full length of the equilibrium simulations, even without a holding potential or graphene surface defects. The diffusivities of the adsorbed and the fully solvated DA are similar, and all molecular diffusion on the surface is slower than that of an adatom of comparable molecular weight. The protonated species diffuse more slowly than their corresponding neutral forms, and the oxidized species diffuse more rapidly. The underlying hexagonal graphene structure has little influence over the molecular adsorbate's lateral position. The vertical placement of the amine group on dopamine is highly dependent upon its charge, and the protonated amine prefers to be above the surface near the solvating waters. Solvation has a large effect on surface diffusivities when diffusion is compared to that in a vacuum. These are the first results of molecular dynamics simulations of dopamine diffusion at the aqueous-graphene interface, and they show that dopamine diffuses quickly on graphene surfaces, even without an applied potential. These calculations provide a basis for future simulations to predict the behavior of neurotransmitter diffusion on advanced carbon materials electrodes.
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