In this work, we explore the potential of a rigid Cu 2+ spin-labeling technique, the double histidine (dHis) motif, along with Q-band electron paramagnetic resonance to report on the relative orientations of the spin labels. We show that the precision of the dHis motif, coupled with the sensitivity and resolution of Q-band frequencies, may allow for the straightforward determination of the relative orientation of the dHis-Cu 2+ labels using double electron− electron resonance (DEER). We performed Q-band DEER measurements at different magnetic fields on a protein containing two dHis Cu 2+ sites. These measurements exhibited orientational selectivity such that each discrete magnetic field yielded a unique DEER signal. We determined the relative orientation of the two metal centers by simulating the orientationally selective DEER data. These relative orientations were validated by visual analysis of the protein crystal structure modified with dHis sites. The simple visual analysis was shown to agree well with the angular values determined via simulation of the experimental data. The combination of the dHis-Cu 2+ motif along with the advantages of the Q-band can aid in the accurate measurement of protein structural and conformational dynamics.

Electron paramagnetic resonance (EPR) in combination with the recently developed double-histidine (dHis)-based Cu2+ spin labeling has provided valuable insights into protein structure and conformational dynamics. To relate sparse distance constraints measured by EPR to protein fluctuations in solution, modeling techniques are needed. In this work, we have developed force field parameters for Cu2+–nitrilotriacetic and Cu2+–iminodiacetic acid spin labels. We employed molecular dynamics (MD) simulations to capture the atomic-level details of dHis-labeled protein fluctuations. The interspin distances extracted from 200 ns MD trajectories show good agreement with the experimental results. The MD simulations also illustrate the dramatic rigidity of the Cu2+ labels compared to the standard nitroxide spin label. Further, the relative orientations between spin-labeled sites were measured to provide insight into the use of double electron–electron resonance (DEER) methods for such labels. The relative mean angles, as well as the standard deviations of the relative angles, agree well in general with the spectral simulations published previously. The fluctuations of relative orientations help rationalize why orientation selectivity effects are minimal at X-band frequencies, but observable at the Q-band for such labels. In summary, the results show that by combining the experimental results with MD simulations precise information about protein conformations as well as flexibility can be obtained.

Using diverse building blocks, such as different heterometallic clusters, in metal-organic framework (MOF) syntheses greatly increases MOF complexity and leads to emergent synergistic properties. However, applying reticular chemistry to syntheses involving more than two molecular building blocks is challenging and there is limited progress in this area. We are therefore motivated to develop a strategy for achieving systematic and differential control over the coordination of multiple metals in MOFs. Herein, we report the design and synthesis of a diverse series of heterobimetallic MOFs with different metal ions and clusters severally distributed throughout two or three inorganic secondary building units (SBUs). By taking advantage of the bifunctional isonicotinate linker and its derivatives, which can coordinatively distinguish between early and late transition metals, we control the assembly and topology of up to three different inorganic SBUs in one-pot solvothermal reactions. Specifically, M(μ-O) (μ-OH)(CO) (M = Zr, Hf, Dy) SBUs are formed along with metal-pyridyl complexes. By controlling the geometry of the metal-pyridyl complexes, we direct the overall topology to produce eight new MOFs with fcu, ftw, and previously unreported trinodal pfm crystallographic nets.

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Incorporating open metal sites (OMS) into metal–organic frameworks allows design of well-defined binding sites for selective molecular adsorption, which has a profound impact on catalysis and separations. We demonstrate that Cu­(I) sites incorporated into MFU-4l preferentially adsorb olefins over paraffins. Density functional theory (DFT) calculations show that the OMS are independent, with no dependence of binding energy on olefin loading up to one olefin per Cu­(I). Experimentally, increasing Cu­(I) loading increased olefin uptake without affecting the binding energy, as predicted by DFT and confirmed by temperature-programmed desorption. The potential of this material for olefin/paraffin separation under ambient conditions was investigated by gas adsorption and column breakthrough experiments for an equimolar ratio of olefin/paraffin. High-grade propylene and ethylene (>99.999%) can be generated using temperature–concentration swing recycling from a Cu­(I)-MFU-4l packed column with no measurable paraffin breakthrough.

Conspectus In this Account, we showcase site-directed Cu2+ labeling in proteins and DNA, which has opened new avenues for the measurement of the structure and dynamics of biomolecules using electron paramagnetic resonance (EPR) spectroscopy. In proteins, the spin label is assembled in situ from natural amino acid residues and a metal complex and requires no post-expression synthetic modification or purification procedures. The labeling scheme exploits a double histidine (dHis) motif, which utilizes endogenous or site-specifically mutated histidine residues to coordinate a Cu2+ complex. Pulsed EPR measurements on such Cu2+-labeled proteins potentially yield distance distributions that are up to 5 times narrower than the common protein spin labelthe approach, thus, overcomes the inherent limitation of the current technology, which relies on a spin label with a highly flexible side chain. This labeling scheme provides a straightforward method that elucidates biophysical information that is costly, complicated, or simply inaccessible by traditional EPR labels. Examples include the direct measurement of protein backbone dynamics at β-sheet sites, which are largely inaccessible through traditional spin labels, and rigid Cu2+–Cu2+ distance measurements that enable higher precision in the analysis of protein conformations, conformational changes, interactions with other biomolecules, and the relative orientations of two labeled protein subunits. Likewise, a Cu2+ label has been developed for use in DNA, which is small, is nucleotide independent, and is positioned within the DNA helix. The placement of the Cu2+ label directly reports on the biologically relevant backbone distance. Additionally, for both of these labeling techniques, we have developed models for interpretation of the EPR distance information, primarily utilizing molecular dynamics (MD) simulations. Initial results using force fields developed for both protein and DNA labels have agreed with experimental results, which has been a major bottleneck for traditional spin labels. Looking ahead, we anticipate new combinations of MD and EPR to further our understanding of protein and DNA conformational changes, as well as working synergistically to investigate protein–DNA interactions.

A native paramagnetic metal binding site in a protein is located with less than 2 Å resolution by a combination of double histidine (dHis) based Cu2+ labeling and long range distance measurements by EPR.

Cu2–x Se nanoparticles are part of a promising class of alternative plasmonic materials where the location, stability, and structural impact of charge carrier generation are crucial to their optoelectronic performance. Here, electron paramagnetic resonance spectroscopy is used to identify the location and dynamics of Cu2+ environments that form upon air-induced oxidation of Cu2–x Se nanoparticles. The results indicate the formation of two distinct Cu2+ environments at or near the surface of the nanoparticle. The first environment can be assigned to Cu2+ bound to oleylamine capping ligands, and the second can be assigned to Cu2+ located in CuO domains. In addition, these experiments indicate that the observed Cu2+ environments are consistent with vacancy formation on the Cu sublattice, which are mobile (i.e., vacancy hopping) at temperatures down to 180 K. Taken together, our results elucidate time scales of air-mediated Cu oxidation in Cu2–x Se nanoparticles, the chemical environments of the resulting Cu2+ species, and the impact of this oxidation on the overall particle crystallographic structure and optoelectronic properties.