The immobilization antigens (i-antigens) of Paramecium, large polypeptides of relative molecular mass approximately 300,000, are located on the cell surface. Each i-antigen is encoded by a different unlinked gene, and no more than one gene is expressed at a time. The proteins and the mRNAs and genes encoding them are readily isolated. Here we report the nucleotide sequence of three regions of the A i-antigen gene from stock 51 of Paramecium tetraurelia. Surprisingly, all reading frames contain TAA and TAG stop codons, even though there is evidence that one reading frame of these sequences codes for the i-antigen. We suggest that in Paramecium UAA and UAG code for amino acids, instead of serving as translational stops as they do in all other organisms.
Two new alleles, C ahd c, involved in mating type expression were demonstrated. A dominant allele, C(cycler), must be present for the expression of the rhythm involving a sequential alternation of the two complementary mating types (I11 and IV). Cultures can be entrained with light-dark cycles. The phase of each clone can be characterized by its I11 to IV and IV to I11 transitions in relation to the zero hour of a given light-dark cycle. Phase is a stable phenotypic trait during asexual reproduction, but following sexual reproduction it does not display Mendelian segregation. Instead phase is determined through nuclear differentiation, he., the trait is controlled by differently determined macronuclear anlagen (caryonidal inheritance) which normally segregate at the second cell division after conjugation. The phase of a clone within its genetic limits is a function of the photofractions and the light intensities used in the entraining treatment. By examining a number of clones a variety of phase angles between the mating type cycle and the entraining light-dark cycle are found. Dividing cells which are sexually unreactive and therefore do not express the rhythm can be entrained and following entrainment, phase is inherited through repeated cell replications at a rate greater than one fission a day in continuous darkness or continuous dim light. This result unique to this system indicates that the cellular processes underlying the phase and period of this circadian rhythm persist (unexpressed: sexual reactivity requires slight starvation) through repeated cell replications even when the division cycle is considerably shorter than the expressed circadian period. The rhythm has a circadian period in continuous darkness or light (tested for six days) of less than 24 hours. The reversal of mating type ceases in continuous light at higher intensities. Cells homozygous for the recessive allele, c(acyclic), do not reverse mating type but are either mating type I11 or IV, again as a consequence of nuclear differentiation. Since individual cells with the dominant allele express both mating types, differentiation for mating type can not involve the absence in the macronucleus of mating type determining factors.
Several genes for surface antigens of the Paramecium aurelia complex of species have been isolated. In addition to known deletions of the 51A gene, we have obtained deletions involving the 51B gene and have developed a procedure for obtaining deletions of additional genes. Both Mendelian and non-Mendelian deletions of both the A and B genes have been found. In the non-Mendelian deletions the genes are present in the micronuclei and absent in the macronuclei. Processing of micronuclear DNA into new macronuclear DNA at conjugation and autogamy is under the control of the old macronucleus, and newly forming macronuclei become exactly like the old. Thus in the non-Mendelian mutants, macronuclei have a specific antigen gene deleted and also are impaired in their ability to direct normal DNA processing at the next conjugation or autogamy. These cases, along with others, show that this system of macronuclear control is a fundamental feature of ciliate genetics. The sequence of the 51A and 51C genes is described and compared with the 156G and 51H genes obtained by others. The 51A and 156G genes are remarkably similar while 51C and 51H are rather different. No introns or pseudogenes have been observed. Some, possibly all, of the genes are on the ends of chromosomes. Characteristic upstream and downstream sequences adjacent to the coding portions of the genes are given. The sequences UAA and UAG are preferred over CAA and CAG for glutamine while UGA is the true stop codon.
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