There is a need to evaluate and choose a possible population source of the threatened catfish Clarias macrocephalus for possible reintroduction into aquaculture. Identifying gene transcription profiles that provide fitness benefits in specific environments would promote more effective species reintroduction and conservation practices. In this study, comparison of hepatic transcriptome profiles was made in terms of expression patterns of various growth-, immune-and reproduction-related genes of two Clarias macrocephalus strains from Cagayan (CmC) and Agusan del Sur (CmA), located in the Northern and Southern Philippines, respectively. RNA sequencing results showed that there were 13,138 differentially expressed genes (DEGs) identified in CmA vs. CmC, of which 6,795 DEGs exhibited significant upregulation while 6,343 DEGs displayed significant downregulation. From this pool of DEGs, numerous immune-(complements C3, C4, C7), growth-(glutamine synthetase, GLUL; glycogen synthase, GYS; elongation of very long chain fatty acids protein 6, ELOVL6, lipoprotein lipase, LPL) and reproduction-related (vitellogenin, VTG; cytochrome p450 19b-like, CYP19b; progesterone receptor, PGR) genes were identified. Pathway enrichment analysis revealed the enrichment of the complement component and coagulation cascades, protein digestion and absorption and lipid metabolism pathways. Results of this study indicated that when reintroduction was to be done, C. macrocephalus population from Agusan Marsh is predicted to grow much faster because of up-regulated growth-related genes, to be more resistant to pathogens/environmental stressor as it manifested upregulated immune-related genes and to reproduce better as reflected by its upregulated reproduction-related genes than its counterpart catfish from Cagayan.The IJA is a peer-reviewed open-access, electronic journal, freely available without charge to users -Produced by the AquacultureHub non-profit Foundation Sale of IJA papers is strictly forbidden 2 Ariñes et al.
We studied the mechanism of the effects of 17α-methyltestosterone (MT) on previously reported enhanced growth and maturation of the Asian catfish Clarias macrocephalus. A total of 18 pubertal male (3 fish·tank-1) catfish (ABW=125.97 g) were stocked into six experimental circular tanks and fed with a basal diet (control) or a basal diet containing 60 mg MT kg-1 diet for 90 days. At the termination of the experiment, livers were excised, and total RNA was extracted, evaluated, and reverse transcribed to cDNA. Six libraries of cDNA (3 for the control and 3 for the MT-treated group) were subjected to bioinformatics. Differentially expressed genes (DEGs) were identified using similarity scores of the de novo assembled transcript with those in the seven public databases. There were 141 up- and 72 down-regulated DEGs, mostly belonging to uncharacterized/not yet identified proteins. Thus, DEGs in the top enriched KEGG pathways were used to characterize the effects of MT. Upregulated DEGs included tyrosine hydroxylase (TH), Cytoplasmic Polyadenylation Element Binding (CPEB), Fas-associated death domain (FADD), Major Histocompatibility Complex class 1 (MHC-1), other immune-related genes, among others. Down-regulated DEGs included Cytochrome P450 family one subfamily A member 1 (CYP1A1), Alternative oxidase (AOX), UDP-glycosyltransferase (UGT), Acyl-CoA Synthase Bubblegum Family Member 1 (ACSBG), Stearoyl-CoA Desaturase (SCD), among others. In conclusion, MT-treated male Clarias macrocephalus exhibited up-regulation of pathways protecting cellular conditions like cell proliferation, survival, development and homeostasis processes, for development and homeostasis processes. MT also affected changes in bile acid production and the inhibition of the production/conversion of testosterone. MT resulted in the down-regulation of a serotonergic system that possibly affected gonadal development, inhibition of the retinoid enzyme that would otherwise diminish the full effects of MT or its metabolite, and inhibition of the formation of estrogen, leading to down-regulation of several estrogen-related KEGG pathways. The results provide valuable information about the key genes for use as biomarkers of maturation and reproduction for the Asian catfish and contribute to our understanding of the molecular mechanisms and regulative pathways behind these two processes in fish.
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