Genetic diversity assessment and population structure analysis are essential for characterization of pathogens and their isolates. Markers are essential tools for exploring genetic variation among the isolates. False smut of rice caused by Ustilaginoidea virens, formerly Villosiclava virens, is a major emerging disease of rice in India. A high level of variability is observed at the field level, but no information is available from India on genetic diversity and population structure. This is the first report of genetic diversity and population structure of U. virens from India that included 63 isolates distributed across the vast geographical area of eastern and north‐eastern India (18.9 to 26.7°N and 82.6 to 94.2°E). Seventeen RAPDs and 14 SSRs were identified as polymorphic and a total of 140 alleles were detected across the populations. The average number of alleles per locus for each primer was 4.5. All the isolates were grouped into two major clusters, with partial geographical segregation that was supported by principal coordinate analysis. Mantel test suggested genetic distance within the isolates increased with increasing geographical distance. Analysis of molecular variation showed more genetic variation within populations and less among populations. This outcome will help in understanding genetic diversity of U. virens from eastern and north‐eastern India and in planning effective management strategies.
Stagnant flooding (SF) is a serious threat for rice production in rainfed lowland areas of Southeast Asian countries. To overview the SF effect, photosynthetic performances and productivity were studied with three landraces (Ravana, Kamini, and Rashpanjor) and four high-yielding cultivars (Savitri, Savitri-Sub1, Gayatri, and Varshadhan) of rice under medium depth (40-50 cm) of water level. Stagnant flooding significantly increased the stem elongation and decreased yield and yield attributing parameters. The chlorophyll a fluorescence rises from O-to P-step with distinct J-and I-step were noticed in all the cultivars up to 75 d of SF. Prolonged flooding (> 2 months) perturbed both donor and acceptor side of PSII. Vitality indices (PIABS and PITOT) decreased greatly under prolonged SF. Analysis of O-J-I-P transients suggests that the information is useful for agricultural planning with the purpose to enhance rice yield under lowland medium depth SF.
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