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BackgroundInvasive species represent a global concern for their rapid spread and the possibility of infectious disease transmission. This is the case of the global invader Aedes albopictus, the Asian tiger mosquito. This species is a vector of medically important arboviruses, notably chikungunya (CHIKV), dengue (DENV) and Zika (ZIKV). The reconstruction of the complex colonization pattern of this mosquito has great potential for mitigating its spread and, consequently, disease risks.Methodology/Principal findingsClassical population genetics analyses and Approximate Bayesian Computation (ABC) approaches were combined to disentangle the demographic history of Aedes albopictus populations from representative countries in the Southeast Asian native range and in the recent and more recently colonized areas. In Southeast Asia, the low differentiation and the high co-ancestry values identified among China, Thailand and Japan indicate that, in the native range, these populations maintain high genetic connectivity, revealing their ancestral common origin. China appears to be the oldest population. Outside Southeast Asia, the invasion process in La Réunion, America and the Mediterranean Basin is primarily supported by a chaotic propagule distribution, which cooperates in maintaining a relatively high genetic diversity within the adventive populations.Conclusions/SignificanceFrom our data, it appears that independent and also trans-continental introductions of Ae. albopictus may have facilitated the rapid establishment of adventive populations through admixture of unrelated genomes. As a consequence, a great amount of intra-population variability has been detected, and it is likely that this variability may extend to the genetic mechanisms controlling vector competence. Thus, in the context of the invasion process of this mosquito, it is possible that both population ancestry and admixture contribute to create the conditions for the efficient transmission of arboviruses and for outbreak establishment.

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Haplogroup G, together with J2 clades, has been associated with the spread of agriculture, especially in the European context. However, interpretations based on simple haplogroup frequency clines do not recognize underlying patterns of genetic diversification. Although progress has been recently made in resolving the haplogroup G phylogeny, a comprehensive survey of the geographic distribution patterns of the significant sub-clades of this haplogroup has not been conducted yet. Here we present the haplogroup frequency distribution and STR variation of 16 informative G sub-clades by evaluating 1472 haplogroup G chromosomes belonging to 98 populations ranging from Europe to Pakistan. Although no basal G-M201* chromosomes were detected in our data set, the homeland of this haplogroup has been estimated to be somewhere nearby eastern Anatolia, Armenia or western Iran, the only areas characterized by the co-presence of deep basal branches as well as the occurrence of high sub-haplogroup diversity. The P303 SNP defines the most frequent and widespread G sub-haplogroup. However, its sub-clades have more localized distribution with the U1-defined branch largely restricted to Near/Middle Eastern and the Caucasus, whereas L497 lineages essentially occur in Europe where they likely originated. In contrast, the only U1 representative in Europe is the G-M527 lineage whose distribution pattern is consistent with regions of Greek colonization. No clinal patterns were detected suggesting that the distributions are rather indicative of isolation by distance and demographic complexities.

Sequence heterogeneity of hepatitis C virus (HCV) is unevenly distributed along the genome, and maximal variation is confined to a short sequence of the HCV second envelope glycoprotein (E2), designated hypervariable region 1 (HVR1), whose biological function is still undefined. We prospectively studied serological responses to synthetic oligopeptides derived from HVR1 sequences of patients with acute and chronic HCV infection obtained at baseline and after a defined follow-up period. Extensive serological cross-reactivity for unrelated HVR1 peptides was observed in the majority of the patients. Antibody response was restricted to the IgG1 isotype and was focused on the carboxyterminal end of the HVR1 region. Cross-reactive antibodies could be readily elicited following immunization of mice with multiple antigenic peptides carrying HVR1 sequences derived from our patients. The vigor and heterogeneity of cross-reactive antibody responses were significantly higher in patients with chronic hepatitis compared with those with acute hepatitis and in patients infected with HCV type 2 compared with patients infected with other viral genotypes (predominantly type 1), which suggest that higher time-related HVR1 sequence diversification previously described for type 2 may result from immune selection. The finding of a statistically significant correlation between HVR1 sequence variation, and intensity, and crossreactivity of humoral immune responses provided stronger evidence in support of the contention that HCV variant selection is driven by the host's immune pressure. (HEPATOL-OGY 1999;30:537-545.)Hepatitis C virus (HCV) causes chronic infection in more than 60% of exposed individuals through pathogenetic mechanisms that are still poorly understood. 1 Similarly to human immunodeficiency virus (HIV), HCV is able to persist for a virtually indefinite period of time in the host, despite the coexistence of virus-specific immune responses. 2 How HCV induces chronic infection in the face of detectable cellular and humoral immune responses is currently unknown, but the ability of the virus to undergo rapid and substantial sequence modifications is thought to be a major factor in this process. [2][3][4][5][6][7][8][9][10][11] Sequence variation is unevenly distributed along the HCV genome with maximal nucleotide and aminoacid replacements being localized in a stretch of 31 residues at the N-terminus of the second envelope glycoprotein (E2) region named hypervariable region 1 (HVR1). 12 Sequential studies of sequence changes in acute and chronic HCV infection have shown that viral variants are continuously being selected in this region 13,14 and, therefore, HVR1 variation may be a mechanism by which HCV evades neutralizing responses, leading to persistent infection.Most studies point to HVR1 as the major immunogenic domain of E2, although the presence of additional B-cell sites outside HVR1 has been documented, 15 and a conserved B-cell epitope, only partially overlapping with HVR1, has been recently described that competes for ...

By considering COMT, OPRM1, and UGT2B7 genotypes, as well as pharmacokinetic results, only COMT polymorphisms appear to be predictive of morphine need in postoperative pain therapy.

Hepatitis C virus (HCV) infection is a dynamic process during which molecular variants are continously selected as the result of virus adaptation to the host. Understanding the nature of HCV genetic variation is central to current theories of pathogenesis and immune response. We prospectively studied hypervariable region 1 (HVR1) variation in the E2 gene of 36 hepatitis C patients, including 10 asymptomatic carriers, followed up for 1 to 2 years. Sequence changes in single and consecutive serum samples were assessed and correlated with clinical and virological parameters of liver disease. A region of the E1 gene was sequenced for comparison in 3 subjects. HVR1 heterogeneity at single time points widely varied in individual patients, did not increase cumulatively over the follow-up period, and did not correlate with HVR1 evolutionary rates. Conversely, the process of HVR1 sequence diversification, although differed considerably among patients, was stable over time and directly correlated with infections by HCV type 2, lower alanine aminotransferase (ALT) levels, and absence of cirrhosis. HCV carriers showed the highest HVR1 variation rates. Our findings indicate that HVR1 variation has an adaptive significance and is associated with favorable features of liver disease and suggest that prospective, rather than static, observations are required to model the process of HCV variation. (HEPATOLOGY 1998;27:1678-1686.)Hepatitis C virus (HCV) shares with other eukaryotic RNA viruses considerable sequence diversity both among isolates from unrelated individuals and within the same individual, 1 in which the virus is not present as a single molecular species, but as a variable population of closely related genomes, 2 according to the model of the viral quasispecies. 3,4 HCV sequence diversity observed among isolates is relevant to the process of viral evolution as it occurred during the history of human populations 1 ; therefore, it has been largely exploited to classify viral variants showing different epidemiologic and pathogenetic features. 5 Conversely, genetic diversity within individuals is more pertinent to the long-term adaptation of the virus to the host and reflects the dynamics of viral populations and the selective mechanisms operating during the course of the infection. 4 Sequence diversity is unevenly distributed throughout the viral genome being highly concentrated at the N-terminus of the E2 envelope glycoprotein, in which an hypervariable region (HVR1) of 31 aminoacids has been identified. 6 This suggests that sequence changes within HVR1 do not simply reflect the intrinsic mutation rates of the virus, but rather indicates that viral variants are actively selected and that genetic variation in this region may have an adaptive significance. [7][8][9][10] The quasispecies nature of the RNA virus populations represents a formidable obstacle to the study of genetic variation; this is a problem further compounded by the lack of structural constraints within protein domains, such as the hypervariable regions of ...

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