The advent of ultrafast highly brilliant coherent X-ray free-electron laser sources has driven the development of novel structure-determination approaches for proteins, and promises visualization of protein dynamics on sub-picosecond timescales with full atomic resolution. Significant efforts are being applied to the development of sample-delivery systems that allow these unique sources to be most efficiently exploited for high-throughput serial femtosecond crystallography. Here, the next iteration of a fixed-target crystallography chip designed for rapid and reliable delivery of up to 11 259 protein crystals with high spatial precision is presented. An experimental scheme for predetermining the positions of crystals in the chip by means of in situ spectroscopy using a fiducial system for rapid, precise alignment and registration of the crystal positions is presented. This delivers unprecedented performance in serial crystallography experiments at room temperature under atmospheric pressure, giving a raw hit rate approaching 100% with an effective indexing rate of approximately 50%, increasing the efficiency of beam usage and allowing the method to be applied to systems where the number of crystals is limited.

Photoexcitation of spin crossover (SCO) complexes can trigger extensive electronic spin transitions and transformation of molecular structure. However, the precise nature of the associated ultrafast structural dynamics remains elusive, especially in the solid state. Here, we studied a single-crystal SCO material with femtosecond electron diffraction (FED). The unique capability of FED allows us to directly probe atomic motions and to track ultrafast structural changes within a crystal lattice. By monitoring the time-dependent changes of the Bragg reflections, we observed the formation of a photoinduced structure similar to the thermally induced high-spin state. The data and refinement calculations indicate the global structural reorganization within 2.3 ps, as the metal-ligand bond distribution narrows during intramolecular vibrational energy redistribution (IVR) driving the intermolecular rearrangement. Three independent dynamical group are identified to model the structural dynamics upon photoinduced SCO.

How does chemistry scale in complexity to unerringly direct biological functions? Nass Kovacs et al. have shown that bacteriorhodopsin undergoes structural changes tantalizingly similar to the expected pathway even under excessive excitation. Is the protein structure so highly evolved that it directs all deposited energy into the designed function? It is difficult to overstate the importance of having atomic structures to help shape our thinking and understanding of matter. Structural information constrains the number of possible solutions in trying to piece together a puzzle in how matter undergoes transformation from one structure to another and the associated changes in material properties 1,2. In terms of understanding biological processes, this question always reduces to how the protein structure surrounding an active site has evolved to direct chemical processes into biological functions, typically with efficiencies well beyond our current capabilities to exploit chemistry. In this respect, bacteriorhodopsin (bR) serves as a model system for understanding structurefunction relationships for membrane proteins 3-5. This system functions as a light-driven, outward proton pump, which can be triggered by light to use time resolved optical methods to watch it function in real time. Its structure is composed of seven transmembrane α-helices that are covalently bound to a photoactive retinal molecule via a lysine residue through a Schiff base linkage (Fig. 1b). Upon absorbing a photon, the retinal chromophore undergoes rapid isomerization from an all-trans to 13-cis form passing through the I 460 (charge separated), J 625 (highly twisted) and K 590 (isomerized) intermediates. The retinal isomerization acts like a push in changing the electrostatic and structural environment around the active site. These changes in turn lead to a series of cascaded protein conformational changes to facilitate the transport of a proton from the retinal Schiff base to the extracellular side of the membrane via L 550 and M 410 intermediates. The retinal then undergoes reprotonation and thermal re-isomerization through the N 560 and O 630 intermediates, respectively, where it can then return to the bR 568 ground state. These processes have been well characterized spectroscopically and many of the long-lived

A fixed-target approach to high-throughput room-temperature serial synchrotron crystallography with oscillation is described. Patterned silicon chips with microwells provide high crystal-loading density with an extremely high hit rate. The microfocus, undulator-fed beamline at CHESS, which has compound refractive optics and a fast-framing detector, was built and optimized for this experiment. The high-throughput oscillation method described here collects 1–5° of data per crystal at room temperature with fast (10° s−1) oscillation rates and translation times, giving a crystal-data collection rate of 2.5 Hz. Partial datasets collected by the oscillation method at a storage-ring source provide more complete data per crystal than still images, dramatically lowering the total number of crystals needed for a complete dataset suitable for structure solution and refinement – up to two orders of magnitude fewer being required. Thus, this method is particularly well suited to instances where crystal quantities are low. It is demonstrated, through comparison of first and last oscillation images of two systems, that dose and the effects of radiation damage can be minimized through fast rotation and low angular sweeps for each crystal.

One of the most basic molecular photophysical processes is that of spin transitions and intersystem crossing between excited states surfaces. The change in spin states affects the spatial distribution of electron density through the spin orbit coupling interaction. The subsequent nuclear reorganization reports on the full extent of the spin induced change in electron distribution, which can be treated similarly to intramolecular charge transfer with effective reaction coordinates depicting the spin transition. Here, single-crystal [Fe II (bpy) 3 ](PF 6 ) 2 , a prototypical system for spin crossover (SCO) dynamics, is studied using ultrafast electron diffraction in the single-photon excitation regime. The photoinduced SCO dynamics are resolved, revealing two distinct processes with a (450 ± 20)-fs fast component and a (2.4 ± 0.4)-ps slow component. Using principal component analysis, we uncover the key structural modes, ultrafast Fe-N bond elongations coupled with ligand motions, that define the effective reaction coordinate to fully capture the relevant molecular reorganization.

Given their nanoscale dimensions, colloidal semiconductor nanocrystals provide unique systems for investigating the dynamics controlling surface chemistry and fundamental issues regarding lattice reorganization upon changes in electron distribution. These systems are particularly amenable to ultrafast electron probes, offering an atomic level picture of the lattice reorganization involved following photoexcitation. Here, we study lead sulfide (PbS) quantum dots with ultrafast electron diffraction to characterize the atomic motions following high-intensity photoexcitation. Short-range nonthermal lattice distortions and increased atomic disorder were observed in PbS colloidal quantum dots ranging from 2.4 to 8.7 nm in size. These effects scaled inversely with size and were less pronounced in nanocrystals with a chloride-containing surface rather than only organic ligands, which is consistent with an effect arising at the surface. The anisotropic, nonthermal lattice disordering occurs preferentially along the (100) crystallographic directions, which could indicate an anisotropic distribution of localized charge between the differing lattice terminations of the {111} and {100} crystal facets. This is consistent with the larger anharmonicity for the lattice potential at lattice sites with reduced ligand coordination relative to the bulk, which has been shown to cause accelerated relaxation into dynamic and static surface trap sites. Through an exploration of quantum dot size and variation in surface termination, this work provides the missing structural details to advance our understanding and control of charge-carrier formation, trapping, and recombination processes in nanoscale semiconductor systems.

For the two proteins myoglobin (MB) and fluoroacetate dehalogenase (FAcD), we present a systematic comparison of crystallographic diffraction data collected by serial femtosecond (SFX) and serial synchrotron crystallography (SSX). To maximize comparability, we used the same batch of crystals, the same sample delivery device, as well as the same data analysis software. Overall figures of merit indicate that the data of both radiation sources are of equivalent quality. For both proteins reasonable data statistics can be obtained with approximately 5000 room temperature diffraction images irrespective of the radiation source. The direct comparability of SSX and SFX data indicates that diffraction quality is rather linked to the properties of the crystals than to the radiation source. Time-resolved experiments can therefore be conducted at the source that best matches the desired time-resolution.

For the two proteins myoglobin and fluoroacetate dehalogenase, we present a systematic comparison of crystallographic diffraction data collected by serial femtosecond (SFX) and serial synchrotron crystallography (SSX). To maximize comparability, we used the same batch of micron-sized crystals, the same sample delivery device, and the same data analysis software. Overall figures of merit indicate that the data of both radiation sources are of equivalent quality. For both proteins, reasonable data statistics can be obtained with approximately 5000 room-temperature diffraction images irrespective of the radiation source. The direct comparability of SSX and SFX data indicates that the quality of diffraction data obtained from these samples is linked to the properties of the crystals rather than to the radiation source. Therefore, for other systems with similar properties, time-resolved experiments can be conducted at the radiation source that best matches the desired time resolution.