SUMMARY Gut mucosal barrier breakdown and inflammation have been associated with high levels of flagellin, the principal bacterial flagellar protein. Although several gut commensals can produce flagella, flagellin levels are low in the healthy gut, suggesting the existence of control mechanisms. We find that mice lacking the flagellin receptor Toll-like receptor (TLR) 5 exhibit a profound loss of flagellin-specific immunoglobulins (Ig) despite higher total Ig levels in the gut. Ribotyping of IgA-coated cecal microbiota showed Proteobacteria evading antibody coating in the TLR5−/− gut. A diversity of microbiome members over-expressed flagellar genes in the TLR5−/− host. Proteobacteria and Firmicutes penetrated small intestinal villi, and flagellated bacteria breached the colonic mucosal barrier. In vitro, flagellin-specific Ig inhibited bacterial motility and down-regulated flagellar gene expression. Thus, innate-immunity directed development of flagellin-specific adaptive immune responses can modulate the microbiome’s production of flagella in a three-way interaction that helps to maintain mucosal barrier integrity and homeostasis.
Sewage sludges are residues resulting from the treatment of wastewater released from various sources including homes, industries, medical facilities, street runoff and businesses. Sewage sludges contain nutrients and organic matter that can provide soil benefits and are widely used as soil amendments. They also, however, contain contaminants including metals, pathogens, and organic pollutants. Although current regulations require pathogen reduction and periodic monitoring for some metals prior to land application, there is no requirement to test sewage sludges for the presence of organic chemicals in the U. S. To help fill the gaps in knowledge regarding the presence and concentration of organic chemicals in sewage sludges, the peer-reviewed literature and official governmental reports were examined. Data were found for 516 organic compounds which were grouped into 15 classes. Concentrations were compared to EPA risk-based soil screening limits (SSLs) where available. For 6 of the 15 classes of chemicals identified, there were no SSLs. For the 79 reported chemicals which had SSLs, the maximum reported concentration of 86% exceeded at least one SSL. Eighty-three percent of the 516 chemicals were not on the EPA established list of priority pollutants and 80% were not on the EPA's list of target compounds. Thus analyses targeting these lists will detect only a small fraction of the organic chemicals in sludges. Analysis of the reported data shows that more data has been collected for certain chemical classes such as pesticides, PAHs and PCBs than for others that may pose greater risk such as nitrosamines. The concentration in soil resulting from land application of sludge will be a function of initial concentration in the sludge and soil, the rate of application, management practices and losses. Even for chemicals that degrade readily, if present in high concentrations and applied repeatedly, the soil concentrations may be significantly elevated. The results of this work reinforce the need for a survey of organic chemical contaminants in sewage sludges and for further assessment of the risks they pose.
Several volatile allelochemicals were identified and characterized from fresh leaf tissue of three distinct populations of the invasive perennial weed, mugwort (Artemisia vulgaris). A unique bioassay was used to demonstrate the release of volatile allelochemicals from leaf tissues. Leaf volatiles were trapped and analyzed via gas chromatography coupled with mass spectrometry. Some of the components identified were terpenes, including camphor, eucalyptol, alpha-pinene, and beta-pinene. Those commercially available were tested individually to determine their phytotoxicity. Concentrations of detectable volatiles differed in both absolute and relative proportions among the mugwort populations. The three mugwort populations consisted of a taller, highly branched population (ITH-1); a shorter, lesser-branched population (ITH-2) (both grown from rhizome fragments from managed landscapes); and a population grown from seed with lobed leaves (VT). Considerable interspecific variation existed in leaf morphology and leaf surface chemistry. Bioassays revealed that none of the individual monoterpenes could account for the observed phytotoxicity imparted by total leaf volatiles, suggesting a synergistic effect or activity of a component not tested. Despite inability to detect a single dominant phytotoxic compound, decreases in total terpene concentration with increase in leaf age correlated with decreases in phytotoxicity. The presence of bioactive terpenoids in leaf surface chemistry of younger mugwort tissue suggests a potential role for terpenoids in mugwort establishment and proliferation in introduced habitats.
Attached bacterial communities can generate three-dimensional (3D) physicochemical gradients that create microenvironments where local conditions are substantially different from those in the surrounding solution. Given their ubiquity in nature and their impacts on issues ranging from water quality to human health, better tools for understanding biofilms and the gradients they create are needed. Here we demonstrate the use of functional tomographic imaging via confocal fluorescence microscopy of ratiometric core-shell silica nanoparticle sensors (C dot sensors) to study the morphology and temporal evolution of pH microenvironments in axenic Escherichia coli PHL628 and mixed-culture wastewater biofilms. Testing of 70-, 30-, and 10-nm-diameter sensor particles reveals a critical size for homogeneous biofilm staining, with only the 10-nm-diameter particles capable of successfully generating high-resolution maps of biofilm pH and distinct local heterogeneities. Our measurements revealed pH values that ranged from 5 to >7, confirming the heterogeneity of the pH profiles within these biofilms. pH was also analyzed following glucose addition to both suspended and attached cultures. In both cases, the pH became more acidic, likely due to glucose metabolism causing the release of tricarboxylic acid cycle acids and CO 2 . These studies demonstrate that the combination of 3D functional fluorescence imaging with well-designed nanoparticle sensors provides a powerful tool for in situ characterization of chemical microenvironments in complex biofilms.
Background: Gut microbiota are important factors in obesity and diabetes, yet little is known about their role in the toxicodynamics of environmental chemicals, including those recently found to be obesogenic and diabetogenic.Objectives: We integrated evidence that independently links gut ecology and environmental chemicals to obesity and diabetes, providing a framework for suggesting how these environmental factors may interact with these diseases, and identified future research needs.Methods: We examined studies with germ-free or antibiotic-treated laboratory animals, and human studies that evaluated how dietary influences and microbial changes affected obesity and diabetes. Strengths and weaknesses of studies evaluating how environmental chemical exposures may affect obesity and diabetes were summarized, and research gaps on how gut ecology may affect the disposition of environmental chemicals were identified.Results: Mounting evidence indicates that gut microbiota composition affects obesity and diabetes, as does exposure to environmental chemicals. The toxicology and pharmacology literature also suggests that interindividual variations in gut microbiota may affect chemical metabolism via direct activation of chemicals, depletion of metabolites needed for biotransformation, alteration of host biotransformation enzyme activities, changes in enterohepatic circulation, altered bioavailability of environmental chemicals and/or antioxidants from food, and alterations in gut motility and barrier function.Conclusions: Variations in gut microbiota are likely to affect human toxicodynamics and increase individual exposure to obesogenic and diabetogenic chemicals. Combating the global obesity and diabetes epidemics requires a multifaceted approach that should include greater emphasis on understanding and controlling the impact of interindividual gut microbe variability on the disposition of environmental chemicals in humans.
Although ibuprofen [2-(4-isobutylphenyl)-propionic acid] is one of the most widely consumed drugs in the world, little is known regarding its degradation by environmental bacteria. Sphingomonas sp. strain Ibu-2 was isolated from a wastewater treatment plant based on its ability to use ibuprofen as a sole carbon and energy source. A slight preference toward the R enantiomer was observed, though both ibuprofen enantiomers were metabolized. A yellow color, indicative of meta-cleavage, accumulated transiently in the culture supernatant when Ibu-2 was grown on ibuprofen. When and only when 3-flurocatechol was used to poison the meta-cleavage system, isobutylcatechol was identified in the culture supernatant via gas chromatography-mass spectrometry analysis. Ibuprofen-induced washed-cell suspensions also metabolized phenylacetic acid and 2-phenylpropionic acid to catechol, while 3-and 4-tolylacetic acids and 2-(4-tolyl)-propionic acid were metabolized to the corresponding methyl catechols before ring cleavage. These data suggest that, in contrast to the widely distributed coenzyme A ligase, homogentisate, or homoprotocatechuate pathway for metabolism of phenylacetic acid and similar compounds, Ibu-2 removes the acidic side chain of ibuprofen and related compounds prior to ring cleavage.Ibuprofen [2-(4-isobutylphenyl)-propionic acid] is a pharmaceutical drug used for its analgesic, antipyretic, and anti-inflammatory properties. It is the third most consumed drug in the world, with an estimated annual production of several kilotons (3). Approximately 10% of the ibuprofen consumed by humans is excreted unmodified or as the glucuronide conjugate (17, 25). Wastewater treatment processes have been found to remove ibuprofen with varying success (3, 28), which may explain why Kolpin et al. (13) detected ibuprofen in 9.5% of the bodies of water that they surveyed. Environmental concentrations of ibuprofen have been found to range from low part-per-trillion (3,9,13,28,30) to low part-per-billion levels (3, 9).Little information exists regarding how ibuprofen is oxidatively metabolized by environmental microbes. Side chain hydroxylation has been reported (13, 31), along with the formation of carboxyhydratropic acid [2-(4-carboxyphenyl)propionic acid] (3, 31) and ibuprofenol [2-(4-isobutylphenyl)-propanol] under anaerobic conditions (4).The most similar compounds whose bacterial metabolisms have been described include 4-isopropylbenzoate (cumate), phenylacetic acid, and 2-phenylpropionic acid (2PPA). Cumate is dioxygenated at the 2,3 position by Pseudomonas putida F1 carrying the cmt operon and subsequently meta-cleaved (5-8).Other routes for the metabolism of phenylacetic acids include the well-characterized homoprotocatechuate (27) and homogentisate pathways (29), as well as the more recently described coenzyme A-ligase pathway (12). Additionally, Streptomyces rimosus has been shown to convert 2PPA to 4-hydroxy-2PPA (15). Finally, Pseudomonas cepacia has been shown to metabolize 2PPA (2) and tropic acid (21) (2-phenyl-3-hydroxy...
Colloids play an important role in facilitating transport of adsorbed contaminants in soils. Recent studies showed that under saturated conditions colloid retention was a function of its concentration. It is unknown if this is the case under unsaturated conditions. In this study, the effect of colloid concentration on colloid retention was investigated in unsaturated columns by increasing concentrations of colloid influents with varying ionic strength. Colloid retention was observed in situ by bright field microscopy and quantified by measuring colloid breakthrough curves. In our unsaturated experiments, greater input concentrations resulted in increased colloid retention at ionic strength above 0.1 mM, but not in deionized water (i.e., 0 mM ionic strength). Bright field microscope images showed that colloid retention mainly occurred at the solid-water interface and wedge-shaped air-water-solid interfaces, whereas the retention at the grain-grain contacts was minor. Some colloids at the air-water-solid interfaces were rotating and oscillating and thus trapped. Computational hydrodynamic simulation confirmed that the wedge-shaped air-water-solid interface could form a "hydrodynamic trap" by retaining colloids in its low velocity vortices. Direct visualization also revealed that colloids once retained acted as new retention sites for other suspended colloids at ionic strength greater than 0.1 mM and thereby could explain the greater retention with increased input concentrations. Derjaguin-Landau-Verwey-Overbeek (DLVO) energy calculations support this concept. Finally, the results of unsaturated experiments were in agreement with limited saturated experiments under otherwise the same conditions.
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