Deep learning has emerged as a powerful approach in various domains, including biological network analysis. This paper investigates the advancements in computational techniques for inferring gene regulatory networks (GRNs) and introduces MCNET, a state-of-the-art deep learning algorithm. MCNET integrates multi-omics data to infer GRNs and extract biologically significant representations from single-cell RNA sequencing (scRNA-seq) data. By incorporating attention mechanisms and graph convolutional networks, MCNET captures intricate regulatory relationships among genes. Extensive benchmarking on diverse scRNA-seq datasets demonstrates MCNET’s superiority over existing methods in GRN inference, scRNA-seq data visualization, clustering, and simulation. Notably, MCNET accurately predicts gene regulations on cell-type marker genes in the mouse cortex, validated by epigenetic data. The introduction of MCNET paves the way for advanced analysis of scRNA-seq data and provides a powerful tool for inferring GRNs in a multi-omics context. Moreover, this paper addresses the integration of multiomics data in gene regulatory network inference, proposing MCNET as a method that efficiently analyzes and visualizes homogeneous gene regulatory networks derived from diverse omics data. The inference capability of MCNET is evaluated through extensive experiments with simulation data and applied to analyze the biological network of psychiatric disorders using human brain data.
Diabetic Retinopathy (DR) is a common complication of diabetes mellitus, which causes lesions onthe retina that affect vision. If it is not detected early, it can lead to blindness. Unfortunately, DRis not a reversible process, and treatment only sustains vision. DR early detection and treatmentcan significantly reduce the risk of vision loss. The manual diagnosis process of DR retina fundusimages by ophthalmologists is time-, effort-, and cost-consuming and prone to misdiagnosis unlikecomputer-aided diagnosis systems.[ 1] Convolutional neural networks are more widely used asa deep learning method in medical image analysis and they are highly effective.[1] Netrascopyis a more efficient system for Diabetic Retinopathy detection, which consists of a low cost,Camera, “DIYretCAM Netrascopy FUNDUS Camera V1”, An Android Application and WebApplication which aims to help patients and doctors detect diabetic retinopathy at early stages bytaking 30-Second video of patient’s retina and passing each frame as an individual test case to aConvolutional Neural Network to detect probability of a patient having diabetic retinopathy.
Deep learning has emerged as a powerful approach in var- ious domains, including biological network analysis. This paper investigates the advancements in computational tech- niques for inferring gene regulatory networks (GRNs) and in- troduces MCNET, a state-of-the-art deep learning algorithm. MCNET integrates multi-omics data to infer GRNs and ex- tract biologically significant representations from single-cell RNA sequencing (scRNA-seq) data. By incorporating atten- tion mechanisms and graph convolutional networks, MCNET captures intricate regulatory relationships among genes. Ex- tensive benchmarking on diverse scRNA-seq datasets demon- strates MCNETs superiority over existing methods in GRN inference, scRNA-seq data visualization, clustering, and sim- ulation. Notably, MCNET accurately predicts gene regula- tions on cell-type marker genes in the mouse cortex, validated by epigenetic data. The introduction of MCNET paves the way for advanced analysis of scRNA-seq data and provides a powerful tool for inferring GRNs in a multi-omics con- text. Moreover, this paper addresses the integration of multi- omics data in gene regulatory network inference, proposing MCNET as a method that efficiently analyzes and visualizes homogeneous gene regulatory networks derived from diverse omics data. The inference capability of MCNET is evalu- ated through extensive experiments with simulation data and applied to analyze the biological network of psychiatric dis- orders using human brain data.
When patients receive care or services, inefficiency can be defined as using more inputs (or resources) than is necessary, and it is associated with unnecessary variation in operational and clinical processes. Among the 8.6 million preventable deaths in 2016, more than 1 million were caused by neonatal problems and tuberculosis in those who accessed the health system but received poor quality of care.
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