The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by-caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures. © Springer Science+Business Media B.V. 2009

There is a resident common bottlenose dolphin population inhabiting the Kvarnerić area of the northern Adriatic Sea, Croatia. The observed decline in population size between 1995 and 2003 led to the declaration of a part of the Kvarnerić as the Cres‐Lošinj Special Marine Reserve (CLSMR) in 2006. Protection lasted 3 years, before lapsing. A boat based photo‐identification study was conducted between 2004 and 2011 with the aim to estimate the number of bottlenose dolphins inhabiting the CLSMR area, investigate the factors influencing their habitat use and explore the possibility that this area is representative of the population for the whole Kvarnerić. Standard mark–recapture methods and the Mth estimator of Chao for closed populations were applied. The lowest value was estimated in 2008 (N = 112; 95% CI = 94–150) and the highest in 2006 (N = 310; 95% CI = 265–392). The statistically significant inter‐annual variability is likely to reflect natural and anthropogenic driven shifts in habitat use rather than real changes in population size. The average monthly sighting rate was lower in the tourist season (Jun–Aug) than in the pre‐ and post tourist‐season, suggesting that developed nautical tourism may influence shifts in habitat use. Other potential causes are distribution of prey and fishing effort. Inclusion of data from the rest of the Kvarnerić for the years of 2005 and 2011 did not reveal a significant increase in estimated abundance (2005: z = −0.413, P = 0.3398; 2011: z = −1.749, P = 0.0401). This indicates that the CLSMR area is representative of the whole Kvarnerić. The number of bottlenose dolphins using the CLSMR area seems to have increased compared with the previous study (1995–2003). This could be due to a shift in habitat use or an increase in population size. However, yearly variations indicate processes causing displacements within the dolphin population home range. Conservation measures aiming at reducing the displacements are proposed. Copyright © 2013 John Wiley & Sons, Ltd.

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BackgroundMediterranean temporary water bodies are important reservoirs of biodiversity and host a unique assemblage of diapausing aquatic invertebrates. These environments are currently vanishing because of increasing human pressure. Chirocephalus kerkyrensis is a fairy shrimp typical of temporary water bodies in Mediterranean plain forests and has undergone a substantial decline in number of populations in recent years due to habitat loss. We assessed patterns of genetic connectivity and phylogeographic history in the seven extant populations of the species from Albania, Corfu Is. (Greece), Southern and Central Italy.Methodology/Principal FindingsWe analyzed sequence variation at two mitochondrial DNA genes (Cytochrome Oxidase I and 16s rRNA) in all the known populations of C. kerkyrensis. We used multiple phylogenetic, phylogeographic and coalescence-based approaches to assess connectivity and historical demography across the whole distribution range of the species. C. kerkyrensis is genetically subdivided into three main mitochondrial lineages; two of them are geographically localized (Corfu Is. and Central Italy) and one encompasses a wide geographic area (Albania and Southern Italy). Most of the detected genetic variation (≈81%) is apportioned among the aforementioned lineages.Conclusions/SignificanceMultiple analyses of mismatch distributions consistently supported both past demographic and spatial expansions with the former predating the latter; demographic expansions were consistently placed during interglacial warm phases of the Pleistocene while spatial expansions were restricted to cold periods. Coalescence methods revealed a scenario of past isolation with low levels of gene flow in line with what is already known for other co-distributed fairy shrimps and suggest drift as the prevailing force in promoting local divergence. We recommend that these evolutionary trajectories should be taken in proper consideration in any effort aimed at protecting Mediterranean temporary water bodies.