An in‐depth understanding of the genetics and evolution of brain function and behavior requires a detailed mapping of gene expression in functional brain circuits across major vertebrate clades. Here we present the Zebra finch Expression Brain Atlas (ZEBrA; www.zebrafinchatlas.org, RRID: SCR_012988), a web‐based resource that maps the expression of genes linked to a broad range of functions onto the brain of zebra finches. ZEBrA is a first of its kind gene expression brain atlas for a bird species and a first for any sauropsid. ZEBrA's >3,200 high‐resolution digital images of in situ hybridized sections for ~650 genes (as of June 2019) are presented in alignment with an annotated histological atlas and can be browsed down to cellular resolution. An extensive relational database connects expression patterns to information about gene function, mouse expression patterns and phenotypes, and gene involvement in human diseases and communication disorders. By enabling brain‐wide gene expression assessments in a bird, ZEBrA provides important substrates for comparative neuroanatomy and molecular brain evolution studies. ZEBrA also provides unique opportunities for linking genetic pathways to vocal learning and motor control circuits, as well as for novel insights into the molecular basis of sex steroids actions, brain dimorphisms, reproductive and social behaviors, sleep function, and adult neurogenesis, among many fundamental themes.
The terrestrial biota of the Caribbean islands includes many lineages, some whose presence on the islands dates back some 35–40 million years ago, when land bridges are thought to have linked islands to continents, and others that have colonised more recently via dispersal. The New World spiny orb-weavers (Micrathena Sundevall, 1833) are a diverse group of mostly Neotropical spiders. Eight species have been described on the Greater Antilles islands: three widespread and five single island endemics. Here, using three molecular markers (16S rRNA, ITS-2 and COI) we provide a preliminary phylogenetic test of the taxonomy and biogeography of Caribbean Micrathena through the first molecular phylogeny of the genus. Our analyses support monophyly of the genus, but not that of Caribbean Micrathena with at least 3–4 colonisations from South America. We sampled six of the eight nominal Caribbean species (M. banksi, M. cubana, M. similis, M. forcipata, M. horrida, M. militaris), but demark eight divergent genetic lineages that all are single island endemics, and morphologically distinct. Thus a revision of the taxonomy of Caribbean Micrathena is needed. Our results function foremost to guide more thorough taxon sampling of Micrathena that enable more rigorous assessments of its diversity and biogeography in the Caribbean.
Aim
We explore the evolutionary history of the ogre‐faced spiders (Deinopis) from their Early Cretaceous origins to present day. Specifically, we investigate how vicariance and dispersal have shaped distribution patterns of this lineage. Within the Caribbean, we test the role of GAARlandia, a hypothesized land bridge that connected South America to the Greater Antilles during the Eocene–Oligocene transition (~35–33 Ma), in the biogeography of Deinopis.
Taxon
Araneae: Deinopidae: Deinopis.
Location
Caribbean islands, with additional global exemplars.
Methods
Combining standard Sanger sequence data with an Anchored Hybrid Enrichment (AHE) phylogenomic dataset, we use Bayesian inference to estimate the phylogenetic relationships of Deinopis. “BioGeoBEARS” is used to test the GAARlandia hypothesis, and to pinpoint major dispersal events in the biogeographic history of Deinopis.
Results
The phylogeny supports the nesting of a Caribbean clade within a continental grade. Model comparisons indicate GAARlandia as the best fitting model, and the biogeographic analyses reflect the geologic history within the Caribbean. Ancient and recent overwater dispersal events are also indicated within this lineage. There is also an ancient 113 Ma split into Old and New World clades.
Main Conclusions
The Deinopis phylogeny corresponds well with geography. This is reflected in the support for the GAARlandia land bridge hypothesis and the phylogenetic relationships within and among Caribbean islands mirroring nuances of Caribbean geologic history. Overwater dispersal also plays an important role in the biogeographic history of this lineage as implicated in the colonization of the volcanic and sedimentary Lesser Antilles and in a “reverse” colonization of North America. The spider family Deinopidae is an ancient lineage with origins dating back to Gondwana. While overwater dispersal has clearly played a role in the biogeography of the genus, the Deinopis phylogeny bears a strong signature of ancient geological events.
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