Priming effect (PE) is defined as a stimulation of the mineralization of soil organic matter (SOM) following a supply of fresh organic matter. This process can have important consequences on the fate of SOM and on the management of residues in agricultural soils, especially in tropical regions where soil fertility is essentially based on the management of organic matter. Earthworms are ecosystem engineers known to affect the dynamics of SOM. Endogeic earthworms ingest large amounts of soil and assimilate a part of organic matter it contains. During gut transit, microorganisms are transported to new substrates and their activity is stimulated by (i) the production of readily assimilable organic matter (mucus) and (ii) the possible presence of fresh organic residues in the ingested soil. The objective of our study was to see (i) whether earthworms impact the PE intensity when a fresh residue is added to a tropical soil and (ii) whether this impact is linked to a stimulation/inhibition of bacterial taxa, and which taxa are affected. A tropical soil from Madagascar was incubated in the laboratory, with a 13 C wheat straw residue, in the presence or absence of a peregrine endogeic tropical earthworm, Pontoscolex corethrurus. Emissions of 12 CO 2 and 13 CO 2 were followed during 16 days. The coupling between DNA-SIP (stable isotope probing) and pyrosequencing showed that stimulation of both the mineralization of wheat residues and the PE can be linked to the stimulation of several groups especially belonging to the Bacteroidetes phylum. The ISME Journal (2012) 6, 213-222; doi:10.1038/ismej.2011; published online 14 July 2011 Subject Category: microbial ecology and functional diversity of natural habitats

International audienceIn the context of Climate Change, the increasing of frequency and intensity of droughts and heat waves constitutes a serious threat for agroecosystems in the Mediterranean region. Soils and their functions may be impacted by these extreme events through changes in the biomass, composition and activities of edaphic microbial communities. We designed an experiment to investigate changes over time in the microbial biomass, composition (EL-FAME profiles) and functions (catabolic responses) after severe drought and high temperature disturbances. Impacts were assessed using indoor soil microcosms under controlled drought and high temperatures, mimicking various stress scenarios and durations in conditions of severe drought and heat wave. Drought and heat wave restructured the soil microbial communities over the course of the experiment. This may be a consequence of inhibition and/or killing of sensitive species and selection of tolerant species by the disturbances applied, but also of the proliferation of fast-growing species after environmental soil conditions had been restored. Heating dry soil at 50 C had a stronger effect than only drying. Moreover, above a critical threshold of heat wave duration, soil microbial communities may have undergone a drastic biomass killing and restructuring associated with a shift in physiological traits. In this experimental context, resilience of microbial catabolic functions was not observed and in consequence ecosystem processes such as carbon mineralization and seques-tration in soil may be affected

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In the tropics, termites are major players in the mineralization of organic matter leading to the production of greenhouse gases including nitrous oxide (N2O). Termites have a wide trophic diversity and their N-metabolism depends on the feeding guild. This study assessed the extent to which N2O emission levels were determined by termite feeding guild and tested the hypothesis that termite species feeding on a diet rich in N emit higher levels of N2O than those feeding on a diet low in N. An in-vitro incubation approach was used to determine the levels of N2O production in 14 termite species belonging to different feeding guilds, collected from a wide range of biomes. Fungus-growing and soil-feeding termites emit N2O. The N2O production levels varied considerably, ranging from 13.14 to 117.62 ng N2O-N d-1 (g dry wt.)-1 for soil-feeding species, with Cubitermes spp. having the highest production levels, and from 39.61 to 65.61 ng N2O-N d-1 (g dry wt.)-1 for fungus-growing species. Wood-feeding termites were net N2O consumers rather than N2O producers with a consumption ranging from 16.09 to 45.22 ng N2O-N d-1 (g dry wt.)-1. Incubating live termites together with their mound increased the levels of N2O production by between 6 and 13 fold for soil-feeders, with the highest increase in Capritermes capricornis, and between 14 and 34 fold for fungus-growers, with the highest increase in Macrotermes muelleri. Ammonia-oxidizing (amoA-AOB and amoA-AOA) and denitrifying (nirK, nirS, nosZ) gene markers were detected in the guts of all termite species studied. No correlation was found between the abundance of these marker genes and the levels of N2O production from different feeding guilds. Overall, these results support the hypothesis that N2O production rates were higher in termites feeding on substrates with higher N content, such as soil and fungi, compared to those feeding on N-poor wood.