The terrestrial mammalian fauna of the North Japanese island, Hokkaido, is more similar to that of Southern Siberia than to the main island of Japan, Honshu. Three species of the genus Myodes (Muridae, Rodentia) are found on Hokkaido, but not on Honshu. While Myodes rufocanus and M. rutilus are widely distributed across Hokkaido as well as the Eurasian continent, M. rex, which is endemic to Hokkaido and its adjacent islands, shows a discontinuous distribution pattern. We analyzed the phylogeographic history of M. rex using the mitochondrial DNA control region in order to interpret their discontinuous distribution pattern. Phylogenetic relationships among 54 distinct haplotypes showed that M. rex can be divided into four clades that occur on the northern, central, and southern regions of the Hokkaido mainland and on Rishiri Island, respectively. The phylogroups in the northern and central regions were largely separated in space, although several areas of sympatry were found. The phylogroup in the southern region, which was clearly separated from other phylogroups, showed markedly low genetic variability. All analyzed individuals from the population on Rishiri belonged to a separate lineage. Across a range of divergence rate estimates, we dated the basal divergence of all phylogroups to the mid to late Pleistocene, with subsequent signals of population expansion within lineages. We conclude that current phylogeographic structure in M. rex likely reflects Pleistocene survival in several separate refugia in situ. Past glacial ages have thus played an important role in shaping the current distribution patterns of mammalian species on Hokkaido.

This study determined the relative abundance of Cebu black shama (Copsychus cebuensis Steere) in selected isolated forest fragments in Cebu Island, Philippines and their genetic diversity based on 619 bp cytB gene. Mist nets were used to capture the bird in these forest fragments. Four contour feathers were plucked from the body of the caught birds, before they were released, and were stored in tubes with 70% ethanol before DNA extraction. Fifty-nine black shama (C. cebuensis) individuals were encountered from the visited territories. At least 13 black shama individuals were estimated to inhabit one hectare of forest habitat. For the first time, analyses of mitochondrial genes revealed that C. cebuensis had a long evolutionary history from an initially large and stable population that went through recent expansion resulting from a recent isolating or bottleneck event as indicated by high haplotype diversity (Hd) and nucleotide diversity (πn), i.e. Hd>0.50 and πn>0.005, and non-significant values of Tajima’s D test, Fu and Li’s D*, and Fu’s Fs statistics. It is hypothesized that this bottleneck event was habitat fragmentation. Furthermore, phylogenetic analyses of C. cebuensis supported its monophyly.

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A knowledge, attitude & perception (KAP) survey was conducted in four important bird areas (IBAs) in Cebu island, Philippines towards the protection and conservation of the Cebu black shama (Copsychus cebuensis) and its habitat. Similarly, the habitat quality of the black shama in the island was also assessed in terms of vegetation composition and diversity. A total of 193 households were interviewed from July 2013 to December 2013. Most of the respondents only finished elementary and high school levels. However, their mean knowledge score was above 6.50 while their attitude mean score was above 9.40. Their perception scores, on the other hand, were highly positive. Regardless of their educational attainment, people living near the identified black shama territories were highly knowledgeable, aware and positive towards the protection and conservation of the endangered bird and its habitat. Forty-five black shama territories were sampled employing 20 m x 20 m quadrats from September 2013 – February 2014. The black shama habitat is characterized with high plant species diversity (H’>3.50), even plant distribution (e >0.75), and low dominance index (D >0.01). In terms of vegetation composition, the black shama habitats were not similar. Integrating the social and ecological knowledge to conservation will likely promote a wider perspective of effective conservation program implementation than social or ecological knowledge alone.