Glacier forefield chronosequences, initially composed of barren substrate after glacier retreat, are ideal locations to study primary microbial colonization and succession in a natural environment. We characterized the structure and composition of bacterial, archaeal and fungal communities in exposed rock substrates along the Damma glacier forefield in central Switzerland. Soil samples were taken along the forefield from sites ranging from fine granite sand devoid of vegetation near the glacier terminus to well-developed soils covered with vegetation. The microbial communities were studied with genetic profiling (T-RFLP) and sequencing of clone libraries. According to the T-RFLP profiles, bacteria showed a high Shannon diversity index (H) (ranging from 2.3 to 3.4) with no trend along the forefield. The major bacterial lineages were Proteobacteria, Actinobacteria, Acidobacteria, Firmicutes and Cyanobacteria. An interesting finding was that Euryarchaeota were predominantly colonizing young soils and Crenarchaeota mainly mature soils. Fungi shifted from an Ascomycota-dominated community in young soils to a more Basidiomycota-dominated community in old soils. Redundancy analysis indicated that base saturation, pH, soil C and N contents and plant coverage, all related to soil age, correlated with the microbial succession along the forefield.
Soils are the product of a complex suite of chemical, biological, and physical processes. In spite of the importance of soils for society and for sustaining life on earth, our knowledge of soil formation rates and of the influence of biological activity on mineral weathering and geochemical cycles is still limited. In this paper we provide a description of the Damma Glacier Critical Zone Observatory and present a first synthesis of our multidisciplinary studies of the 150-yr soil chronosequence. The aim of our research was to improve our understanding of ecosystem development on a barren substrate and the early evolution of soils and to evaluate the influence of biological activity on weathering rates. Soil pH, cation exchange capacity, biomass, bacterial and fungal populations, and soil organic matter show clear gradients related to soil age, in spite of the extreme heterogeneity of the ecosystem. The bulk mineralogy and inorganic geochemistry of the soils, in contrast, are independent of soil age and only in older soils (>100 yr) is incipient weathering observed, mainly as a decreasing content in albite and biotite by coincidental formation of secondary chlorites in the clay fraction. Further, we document the rapid evolution of microbial and plant munities along the chronosequence.
Marine pelagic redoxclines are areas of enhanced biogeochemical cycling inhabited by distinct functional groups of prokaryotes. In this study, the diversity and abundance of archaeal and bacterial nitrifying populations throughout a pelagic redoxcline in the central Baltic Sea were examined using a suite of molecular methods. 16S rRNA/rRNA gene as well as bacterial and archaeal amoA mRNA/amoA gene fingerprints and clone libraries revealed that the putative nitrifying assemblages consisted solely of one crenarchaeotal subcluster, named GD2, which was closely related to Candidatus Nitrosopumilus maritimus. Neither distinct differences between transcriptand gene-based fingerprints nor pronounced differences in the crenarchaeotal composition throughout the whole redoxcline were detected. The abundance of this GD2 subgroup, as determined by the oligonucleotide probe Cren537 and the newly developed and more specific probe Cren679 showed that GD2 and total crenarchaeotal cell numbers were nearly identical throughout the redoxcline. The highest GD2 abundance (2.3 Â 10 5 cells ml À1 ) occurred in the suboxic zone, accounting for around 26% of total prokaryotic cells. Below the chemocline, GD2 abundance was relatively stable (1.5-1.9 Â 10 5 cells ml À1). Archaeal amoA expression was detected only in the putative nitrification zone and formed a narrow band in the suboxic layer, where ammonium, oxygen, nitrate, nitrite and phosphate concentrations were below 5 lmol l À1. To our knowledge this is the first study to show the dominance of only one crenarchaeotal nitrifying key cluster in a natural habitat. The metabolic properties and survival mechanisms present in this cluster inside and outside the nitrification zone remain to be determined.
Recently deglaciated areas are ideal environments to study soil formation and primary microbial succession where phototrophic microorganisms may play a role as primary producers. The aim of our study was to investigate the cyanobacterial and green algal community composition in three different successional stages of the Damma glacier forefield in the Swiss Alps using 16S rDNA and ITS rDNA clone libraries. Cyanobacterial target sequences varied along the glacier forefield, with the highest cyanobacterial 16S rRNA gene copies found in sparsely vegetated soils. Sequence analysis revealed that the phototrophic communities were distinct in each of the three soil environments. The majority of the cyanobacterial sequences retrieved from barren soils were related to the Oscillatoriales. The diversity in sparsely vegetated soils was low, and sequences closely related to Nostoc sp. dominated. The majority of the algal phylotypes are related to members of the Trebouxiophyceae known to live as symbiotic partners in lichens. We conclude that the community composition appears to shift markedly along the chronosequence, indicating that each soil environment selects for its phototrophic community. When cyanobacteria occur together with eukaryotic microalgae, they form a rich source of organic matter and may be important contributors of carbon in nutrient-deficient deglaciated soils.
Fungi were isolated from fine granitic sediments, which were collected at 15 sampling points within a 20 m × 40 m area in front of the Damma glacier in the central Swiss Alps. From the 45 fungal isolates grown on nutrient-rich agar media at 4 °C, 24 isolates were selected for partial sequencing and identification based on the small subunit ribosomal DNA. Sequencing data revealed that the isolated fungi represented three fungal phyla and 15 species. The weathering potential of 10 of the 15 fungal species was tested with dissolution experiments using powdered granite material (<63 μm). The results showed that the zygomyceteous species Mucor hiemalis, Umbelopsis isabellina and Mortierella alpina dissolved the granite powder most efficiently due to the release of a variety of organic acids, mainly citrate, malate and oxalate. In particular, the high concentrations of Ca, Fe, Mg and Mn in the solutions clustered well with the high amounts of exuded citrate. This is the first report on fungi that were isolated from a non-vegetated glacier forefield in which the fungi's capabilities to dissolve granite minerals were examined.
a b s t r a c tThe effect of heat and drought on stomatal behaviour of 2-4-week-old legumes, bean (Phaseolus vulgaris L.) and red clover (Trifolium pratense), was investigated. Drought stress was induced by complete water deficit or with polyethylene glycol (PEG), and abscisic acid (ABA) was applied to mimic plant drought response. Heat stress was simulated by water bath (leaf segments) and infrared and halogen lighting (whole plants). Various experimental conditions were studied: high temperature alone or combined with drought, and low or high photosynthetically active radiation (PAR). Stomatal opening was either measured directly or determined using thermal imaging as a proxy. When water was not limiting, stomata opened in darkness under heat stress. At high PAR, drought and moderate heat caused increased leaf temperatures and temperature oscillations (±3-4• C), attributed to the opening and closing of stomata. At low PAR, heat led to leaf temperature oscillations in control plants, whereas the application of drought caused stomatal closure, increasing leaf temperature to 39• C. Stomatal opening occurred under high temperatures, despite the presence of the drought-induced hormone ABA, and was maintained into a recovery period at room temperature for 30 min. This study helps to illustrate stomatal plasticity and the interplay between leaf gas-exchange and maintaining favourable metabolic conditions (water status and temperature) within the leaf. Knowledge of how legumes are affected by two environmental stresses, heat and drought, expected to occur simultaneously with greater frequency in the future, is important in determining overall plant survival strategies.
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