The characteristics of the interaction between the pi cloud of naphthalene and up to two H2O or H2S molecules were studied. Calculations show that clusters formed by naphthalene and one H2O or H2S molecule have similar geometric features, and also present similar interaction energies. Our best estimates for the interaction energy amount to -2.95 and -2.92 kcal/mol for H2O and H2S, respectively, as obtained with the CCSD(T) method. Calculations at the MP2 level employing large basis sets should be avoided because they produce highly overestimated interaction energies, especially for hydrogen sulfide complexes. The MPWB1K functional, however, provides values pretty similar to those obtained with the CCSD(T) method. Although the magnitude of the interaction is similar with both H2X molecules, its nature is somewhat different: the H2O complex presents electrostatic and dispersion contributions of similar magnitude, whereas for H2S the interaction is dominated by dispersion. In clusters containing two H2X molecules several minima were characterized. In water clusters, the total interaction energy is dominated by the presence of a O-H...O hydrogen bond and, as a consequence, structures where this contact is present are the most stable. However, clusters containing H2S show structures with no interaction between H2S moieties which are as stable as the hydrogen bonded ones, because they allow an optimal H2S...naphthalene interaction, which is stronger than the S-H...S contact. Therefore it is possible that in larger polycycles hydrogen sulfide molecules will be spread onto the surface maximizing S-H...pi interactions rather than aggregated, forming H2S clusters.
The nature of the Boulton-Katritzky rearrangement of (5R)-4-nitrosobenz[c]isoxazole and its anion was studied employing three methodologies: calculation of magnetic properties (magnetic susceptibility, magnetic susceptibility anisotropy, and the nucleus-independent chemical shifts), the natural bonding orbital analysis, and the ACID (anisotropy of the current-induced density) method. The deep analysis of the results indicates a pseudopericyclic character for these reactions despite the aromaticity of the transition states.
A comprehensive B3LYP/6-31G** study of various thermal cheletropic decarbonylations was conducted. The complete pathway for each reaction was determined, and changes in magnetic susceptibility and its anisotropy were monitored with a view to estimating the aromatization associated to each process. This information, together with the energy and structural results, allowed us to clarify cases that are not clearly pseudopericyclic or pericyclic from previous work. Also, our results reveal that pericyclic reactions involve no disconnection in the cyclic array of overlapping orbitals. Therefore, a pseudopericyclic reaction involves at least one such disconnection. In any case, pseudopericyclic reactions involving two disconnections exhibit much clearer features, which facilitates their classification.
The effect of microhydration on the interaction of guanidinium cation with benzene has been studied by employing ab initio calculations. Four different structural arrangements were considered for the guanidinium···benzene interaction to which up to six water molecules were added. T-shaped structures are usually the most stable, but as water molecules are included the energy differences with the parallel structures decrease, reaching a point where parallel complexes are even more stable than T-shaped ones. Therefore, the inclusion of water molecules promotes a change in the structure of the cation···π contact. The analysis reveals that these stability changes are more related with the structure of the hydrating water molecules than to a modulation of the cation···π interaction. Already with three water molecules, one water molecule in the T-shaped complex has to be located in the second solvation shell, whereas in parallel structures this occurs with four water molecules. As a consequence energy differences among structures decrease. The calculations show that the nature of the interaction is almost unaffected in T-shaped structures, whereas an important dispersion increment is observed in parallel ones, though its overall effect is small.
Electrocyclization reactions of (3Z)-1,3,5-hexatrienone and nitrogen derivatives were studied by performing density functional theory (DFT) calculations together with the 6-31+G* basis set. Reactants, products, and transition states for each reaction were localized and the IRC connecting reactants and products was also obtained. Magnetic properties were evaluated along the reaction path to elucidate the characteristics of the reactions studied. As obtained from the calculations, electrocyclization of (3Z)-1,3,5-hexatrienone is a pericyclic process, as indicated by a variety of indexes, such as Nucleus Independent Chemical Shift (NICS), anisotropy of the magnetic susceptibility, or anisotropy of the current-induced density (ACID). This reaction presents characteristics of pericyclic reactions despite the activation energy lowering relative to the electrocyclization of (4Z)-1,2,4,6-heptatetraene, and the relatively small NICS values observed in the transition state. Magnetic properties indicate that an enhancement of the aromaticity relative to reactants and products occurs revealing the absence of orbital disconnections on the cyclic loop of interacting orbitals. Only two reactions among those studied exhibit pseudopericyclic character due to the in-plane attack of the lone pair on nitrogen. In these cases, the reactions showed no barrier for the electrocyclization process, and no aromaticity enhancement was observed.
Several theoretical studies have proposed strategies to reach helical molecular orbitals (Hel-MOs) in [n]cumulenes. While chiral even-[n] cumulenes feature Hel-MOs, odd-[n] cumulenes may also present them if the terminal groups lie on different planes. However, the hitherto proposed systems have been either experimentally unfeasible or resulted in opposite pseudodegenerated Hel-MOs, impeding their use in real applicatons. To overcome this challenge, we hereby demonstrate the introduction of a remarkable energy difference between helical orbitals of opposite twist by fixing the torsion angle between the terminal groups in butadiyne fragments. In order to experimentally lock the conformation of the terminal groups, we designed cyclic architectures by combining acetylenes with chiral spirobifluorenes. A straightforward synthetic strategy along with the high stability allowed the isolation and full characterization of systems presenting distinct helical orbitals. Finally, a thorough computational analysis revealed that the most significant optical responses of these systems originate mainly from the exciton coupling between the featured diphenylbutadiyne fragments. This novel strategy opens now access to the development of systems with distinct helical molecular orbitals suitable for their implementation into chiroptical and optoelectronic applications Scheme 1. General representation of acetylene (top left), [2]cumulene (top center), [3]cumulene (top right) and schematic representation of two possible paths for the formation of helical orbitals in [2]cumulenes (bottom left) and acetylenes (bottom right). Black spheres represent functional groups that can be the same or different and grey lobes stand for p atomic orbitals.
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