The molecular chaperone αB-crystallin, the major player in maintaining the transparency of the eye lens, prevents stress-damaged and aging lens proteins from aggregation. In nonlenticular cells, it is involved in various neurological diseases, diabetes, and cancer. Given its structural plasticity and dynamics, structure analysis of αB-crystallin presented hitherto a formidable challenge. Here we present a pseudoatomic model of a 24-meric αB-crystallin assembly obtained by a triple hybrid approach combining data from cryoelectron microscopy, NMR spectroscopy, and structural modeling. The model, confirmed by cross-linking and mass spectrometry, shows that the subunits interact within the oligomer in different, defined conformations. We further present the molecular architectures of additional well-defined αB-crystallin assemblies with larger or smaller numbers of subunits, provide the mechanism how "heterogeneity" is achieved by a small set of defined structural variations, and analyze the factors modulating the oligomer equilibrium of αB-crystallin and thus its chaperone activity.T he most prominent member of the small heat-shock protein (sHsp) family, α-crystallin, is expressed at high concentrations in the vertebrate eye lens (1) where it plays a major role in maintaining lens transparency (2). Moreover, it protects lens epithelial cells from environmental stress by preventing aggregation of stress-damaged proteins (3). In the low protein turnover milieu of the eye lens, proteins gradually deteriorate throughout the lifespan due to posttranslational modifications and become increasingly prone to aggregation leading to opacity. Thus, the chaperone action of α-crystallin is vital for maintaining the eye lens transparency. Lenticular α-crystallin is composed of two homologous polypeptides, αA-and αB-crystallin, which comprise 173 and 175 amino acid residues, respectively (1, 4). Both proteins possess a three-domain organization consisting of the α-crystallin domain (ACD), a consensus sequence of approximately 90 amino acids common to all sHsps, flanked by a diverse N-terminal region and a moderately conserved C-terminal extension (5, 6).Of the two constituents of α-crystallin, αB-crystallin is the more widespread chaperone with versatile functions: Besides the eye lens, it is abundantly expressed in other tissues (7) and upregulated by various stresses (8). There is growing evidence for its implications in several neuropathological diseases (9) including Parkinson disease, Alzheimer's disease, and multiple sclerosis (10, 11) as well as in cancer (12). In vitro, αB-crystallin prevents the stress-induced aggregation of partially folded polypeptides (3, 13).The αB-crystallin assembles into homooligomers with a variable number of subunits, primarily 24-32 (14-16), and the subunits exchange between homooligomers (17). These properties have hampered high-resolution structural studies on the functionally assembled, full-length protein. An earlier cryoelectron microscopy (cryo-EM) study (18) presented at low resolution (3...

The small heat shock protein αB-crystallin is an oligomeric molecular chaperone that binds aggregation-prone proteins. As a component of the proteostasis system, it is associated with cataract, neurodegenerative diseases, and myopathies. The structural determinants for the regulation of its chaperone function are still largely elusive. Combining different experimental approaches, we show that phosphorylation-induced destabilization of intersubunit interactions mediated by the N-terminal domain (NTD) results in the remodeling of the oligomer ensemble with an increase in smaller, activated species, predominantly 12-mers and 6-mers. Their 3D structures determined by cryo-electron microscopy and biochemical analyses reveal that the NTD in these species gains flexibility and solvent accessibility. These modulated properties are accompanied by an increase in chaperone activity in vivo and in vitro and a more efficient cooperation with the heat shock protein 70 system in client folding. Thus, the modulation of the structural flexibility of the NTD, as described here for phosphorylation, appears to regulate the chaperone activity of αB-crystallin rendering the NTD a conformational sensor for nonnative proteins.olecular chaperones share the ability to bind nonnative, aggregation-prone polypeptides and assist their folding and assembly (1-3). Among these, the small heat shock protein (sHsp) αB-crystallin (also HspB5) is one of the major constituents of the vertebrate eye lens where it functions both as a chaperone and structural protein (4, 5). In nonlenticular tissues, αB-crystallin (αB) participates in sustaining cellular proteostasis. The involvement in neurodegenerative diseases (6, 7), multiple sclerosis (8), myopathies (9), as well as in cell cycle control, apoptosis, and cancer (10, 11) underlines its importance for cellular proteostasis.αB exhibits a tripartite organization (Fig. 1A) with a central α-crystallin domain (ACD) flanked by an N-terminal domain (NTD) and a short C-terminal extension (CTE) (12, 13). The ACD forms stable dimers (14-16) that further assemble into higher-order oligomers via interactions mediated by the NTD and CTE (17)(18)(19). αB forms dynamic populations of multimers with a variable number of subunits (20,21). Structural studies indicate that the variety of oligomeric states including a symmetric 24-mer (22) is created by addition of subunits to (or subtraction from) existing oligomers (17, 18). As for many other sHsps (23), the polydispersity of αB is coupled to spontaneous subunit exchange of yet undetermined units. αB quaternary dynamics was attributed to fluctuations of the intersubunit contacts mediated by the C-terminal IXI motif (24). However, given its involvement in oligomer formation, the NTD must also play a decisive role.In general, sHsps including αB recognize aggregation-prone, partially unfolded substrates (4, 25, 26) and keep them in a refolding-competent state (27, 28). The substrate binding sites of sHsps have not been defined yet. Recent studies suggest the involvement ...

Background: Hypochlorite is strongly bactericidal and used as disinfectant; yet, a response regulator allowing adaptation to the inflicted stress is so far unknown. Results: The transcription factor YjiE specifically confers hypochlorite resistance and is an atypical dodecameric regulator that undergoes DNA-induced dissociation to dimers and tetramers. Conclusion: YjiE protects cells from hypochlorite-induced oxidative damage by triggering a specific stress response. Significance: This is the first described hypochlorite-specific regulator.

jMutations in the leucine-rich repeat kinase 2 gene (LRRK2) are associated with familial and sporadic Parkinson's disease (PD). LRRK2 is a complex protein that consists of multiple domains, including predicted C-terminal WD40 repeats. In this study, we analyzed functional and molecular features conferred by the WD40 domain. Electron microscopic analysis of the purified LRRK2 C-terminal domain revealed doughnut-shaped particles, providing experimental evidence for its WD40 fold. We demonstrate that LRRK2 WD40 binds and sequesters synaptic vesicles via interaction with vesicle-associated proteins. In fact, a domain-based pulldown approach combined with mass spectrometric analysis identified LRRK2 as being part of a highly specific protein network involved in synaptic vesicle trafficking. In addition, we found that a C-terminal sequence variant associated with an increased risk of developing PD, G2385R, correlates with a reduced binding affinity of LRRK2 WD40 to synaptic vesicles. Our data demonstrate a critical role of the WD40 domain within LRRK2 function. Parkinson's disease (PD) is the second most common age-related neurodegenerative disease and is clinically characterized by movement impairments, bradykinesia, rigidity, and resting tremor and pathologically by the progressive loss of dopaminergic neurons in the substantia nigra and the formation of Lewy bodies (1, 2). Although the majority of cases are sporadic, mutations in the leucine-rich repeat kinase 2 (LRRK2) gene (PARK8; Online Mendelian Inheritance in Man [OMIM] accession number 609007) had been unequivocally linked to late-onset autosomal dominant PD. LRRK2 mutations account for up to 13% of familial PD cases compatible with dominant inheritance and are also found in 1 to 2% of sporadic PD patients (62-64). LRRK2 is a complex 286-kDa protein that consists of multiple domains, including (in order, from the amino to carboxyl terminus) armadillo, ankyrin, and the namesake leucine-rich repeats (LRRs), followed by an ROC (Ras of complex proteins) GTPase domain, a COR (C-terminal of ROC) dimerization domain, a kinase domain, and a predicted C-terminal WD40 repeat domain (4-6). Several single-nucleotide alterations have been identified in LRRK2, but only five missense mutations within the ROC, COR, and kinase domains clearly segregate with PD in large family studies (7,8). It has recently been shown that the WD40 domain is required to stabilize the LRRK2 dimer and to execute LRRK2-associated kinase activity as well as neurotoxicity (9, 10), but the role of this domain within LRRK2 physiological and pathological function has not yet been completely defined. The beta-propellerforming WD40 domains are among the 10 most abundant domain types across eukaryotic proteomes (11) and constitute platforms where multiprotein complexes assemble reversibly (12). Here, we systematically analyzed the protein-protein interactions conferred by the LRRK2 WD40 domain. The nature of the LRRK2 WD40 interactors and the finding that the LRRK2 WD40 domain is able to bind to synaptic...

The Clp proteolytic machinery has important functions in many bacteria such as L. monocytogenes. Some organisms encode for two uncharacterized ClpP isoforms. Vibralactone was used to study the activity and assembly of ClpP1 and ClpP2 subunits in a hetero‐oligomeric complex. Electron microscopic images reveal that the tetradecameric assembly is made up of two stacked homoheptameric ClpP1 and ClpP2 rings.

Small heat shock proteins (sHsps) are ubiquitous molecular chaperones that prevent the aggregation of unfolding proteins during proteotoxic stress. In Caenorhabditis elegans, Sip1 is the only sHsp exclusively expressed in oocytes and embryos. Here, we demonstrate that Sip1 is essential for heat shock survival of reproducing adults and embryos. X-ray crystallography and electron microscopy revealed that Sip1 exists in a range of well-defined globular assemblies consisting of two half-spheres, each made of dimeric "spokes." Strikingly, the oligomeric distribution of Sip1 as well as its chaperone activity depend on pH, with a trend toward smaller species and higher activity at acidic conditions such as present in nematode eggs. The analysis of the interactome shows that Sip1 has a specific substrate spectrum including proteins that are essential for embryo development.

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Small heat shock proteins (sHsps) are ubiquitous molecular chaperones which prevent the nonspecific aggregation of non-native proteins. Five potential sHsps exist in the parasite Toxoplasma gondii. They are located in different intracellular compartments including mitochondria and are differentially expressed during the parasite's life cycle. Here, we analyzed the structural and functional properties of all five proteins. Interestingly, this first in vitro characterization of sHsps from protists showed that all T. gondii sHsps exhibit the characteristic properties of sHsps such as oligomeric structure and chaperone activity. However, differences in their quaternary structure and in their specific chaperone properties exist. On the structural level, the T. gondii sHsps can be divided in small (12-18 subunits) and large (24-32 subunits) oligomers. Furthermore, they differ in their interaction with non-native proteins. While some bind substrates tightly, others interact more transiently. The chaperone activity of the three more mono-disperse T. gondii sHsps is regulated by temperature with a decrease in temperature leading to the activation of chaperone activity, suggesting an adaption to specific steps of the parasite's life cycle.