One adaptation of ecological and evolutionary interest is the extraordinary ability of desert rodents to retain water during waste production. Much is known regarding the unique kidney physiology of kangaroo rats (Dipodomys spp.) and their ability to retain water during waste production, yet the genetic basis of these physiological adaptations is relatively unknown. Herein, we utilized RNA-seq data to conduct a comparative study to identify osmoregulatory genes expressed in heteromyid rodents. We sequenced kidney tissue from two temperate desert species (Dipodomys spectabilis and Chaetodipus baileyi) from two separate subfamilies of the Heteromyidae and compared these transcriptomes to a tropical mesic species (Heteromys desmarestianus) from a third subfamily. The evolutionary history of these subfamilies provided a robust phylogenetic control that allowed us to separate shared evolutionary history from convergence. Using two methods to detect differential expression (DE), we identified 1890 genes that showed consistent patterns of DE between the arid and mesic species. A three-species reciprocal BLAST analysis revealed 3511 sets of putative orthologues that, upon comparison to known Mus musculus sequences, revealed 323 annotated and full-length genic regions. Selection tests displayed evidence of positive selection (dn/ds > 1) on six genes in the two desert species and remained significant for one of these genes after correction for multiple testing. Thus, our data suggest that both the coding sequence and expression of genes have been shaped by natural selection to provide the genetic architecture for efficient osmoregulation in desert-adapted heteromyid rodents.

Meningococcal disease (MD) remains an important infectious cause of life threatening infection in both industrialized and resource poor countries. Genetic factors influence both occurrence and severity of presentation, but the genes responsible are largely unknown. We performed a genome-wide association study (GWAS) examining 5,440,063 SNPs in 422 Spanish MD patients and 910 controls. We then performed a meta-analysis of the Spanish GWAS with GWAS data from the United Kingdom (combined cohorts: 897 cases and 5,613 controls; 4,898,259 SNPs). The meta-analysis identified strong evidence of association (P-value ≤ 5 × 10−8) in 20 variants located at the CFH gene. SNP rs193053835 showed the most significant protective effect (Odds Ratio (OR) = 0.62, 95% confidence interval (C.I.) = 0.52–0.73; P-value = 9.62 × 10−9). Five other variants had been previously reported to be associated with susceptibility to MD, including the missense SNP rs1065489 (OR = 0.64, 95% C.I.) = 0.55–0.76, P-value = 3.25 × 10−8). Theoretical predictions point to a functional effect of rs1065489, which may be directly responsible for protection against MD. Our study confirms the association of CFH with susceptibility to MD and strengthens the importance of this link in understanding pathogenesis of the disease.

With the accelerating pace of global change, it is imperative that we obtain rapid inventories of the status and distribution of wildlife for ecological inferences and conservation planning. To address this challenge, we launched the SNAPSHOT USA project, a collaborative survey of terrestrial wildlife populations using camera traps across the United States. For our first annual survey, we compiled data across all 50 states during a 14‐week period (17 August–24 November of 2019). We sampled wildlife at 1,509 camera trap sites from 110 camera trap arrays covering 12 different ecoregions across four development zones. This effort resulted in 166,036 unique detections of 83 species of mammals and 17 species of birds. All images were processed through the Smithsonian’s eMammal camera trap data repository and included an expert review phase to ensure taxonomic accuracy of data, resulting in each picture being reviewed at least twice. The results represent a timely and standardized camera trap survey of the United States. All of the 2019 survey data are made available herein. We are currently repeating surveys in fall 2020, opening up the opportunity to other institutions and cooperators to expand coverage of all the urban–wild gradients and ecophysiographic regions of the country. Future data will be available as the database is updated at eMammal.si.edu/snapshot‐usa, as will future data paper submissions. These data will be useful for local and macroecological research including the examination of community assembly, effects of environmental and anthropogenic landscape variables, effects of fragmentation and extinction debt dynamics, as well as species‐specific population dynamics and conservation action plans. There are no copyright restrictions; please cite this paper when using the data for publication.

One of the most intriguing questions in evolutionary biology is the degree to which behavior is a necessary consequence of morphology. We explore this issue by examining phototactic behavior in epigean (eyed surface-dwelling) and troglomorphic (blind cave) forms of the teleost Astyanax fasciatus whose eyes were modified during embryogenesis by removing one or both lens vesicles from the epigean form or by transplanting the lens vesicle from an epigean fish into the optic cup of a blind cave form. Lens removal results in eye degeneration and blindness in adult epigean fish, whereas lens transplantation stimulates growth of the eye, inducing the development of optic tissues in the normally eyeless adult cave fish. Photoresponsiveness was examined by placing fish in an aquarium with one half illuminated and the other half dark and scoring their presence in the illuminated or dark half. Both the eyeless epigean fish and cave fish with induced eyes are indifferent to the illumination whereas the surface forms are scotophilic, suggesting that optic development and phototactic behavior are decoupled.

Anorexia nervosa (AN) is a complex neuropsychiatric disorder presenting with dangerously low body weight, and a deep and persistent fear of gaining weight. To date, only one genome-wide significant locus associated with AN has been identified(1). We performed an exome-chip based GWAS in 2,158 cases from nine populations of European origin and 15,485 ancestrally matched controls. Unlike previous studies, this GWAS also probed association in low-frequency and rare variants. Sixteen independent variants were taken forward for in silico and de novo replication (11 common, 5 rare). No findings reached genome-wide significance. Two notable common variants were identified; rs10791286, an intronic variant in OPCML (p=9.89x10-6), and rs7700147, an intergenic variant (p=2.93x10-5). No low-frequency variant associations were identified at genome-wide significance, although the study was well-powered to detect low frequency variants with large effect sizes, suggesting that there may be no AN loci in this genomic search space with large effect sizes.

In tropical climates, nest movements by mature ant colonies are probably widespread but the phenomenon of nest relocation is poorly described (McGlynn 2007, McGlynn et al. 2004, Smallwood 1982a). For species that nest in soil, the costs and risks associated with excavating and establishing new nests are consequential, and it is assumed that relocation occurs when the costs are offset by a more advantageous nest location (Avargues-Weber & Monnin 2009, Banschbach & Herbers 1999). Nest movements may occur to areas with greater availability of food resources or to a more favourable microclimate. Here we provide the first report of nest relocation in one of the most widespread and well described ant species in the Neotropics, Ectatomma ruidum (Roger), and we perform a manipulative experiment to test whether food availability or light environment influence nest movement.

The abundances and habitat preferences of peccaries in Neotropical forests are important to understand because these keystone species influence many aspects of the ecosystem. In the Caribbean lowlands of Costa Rica, we conducted walking surveys for~2 years to study the behavior and population trends of collared peccaries (Pecari tajacu), and found that peccaries are abundant at La Selva Biological Station and overall, detection rates were relatively constant through time. A stable estimate of detection rates was achieved only after 7-9 months of surveying. We found no habitat preferences between primary and secondary forest, yet there were some differences in group dynamics-group radius was larger and sighting distance was greater in primary forest, whereas the number of singletons was higher in secondary forest. More peccaries were seen closer to the laboratory clearing than at greater distances, for a variety of probable reasons: habituation to humans, lower predation and hunting pressure, and various environmental and habitat factors. Peccary groups had spatially clumped distributions across the landscape and were more active diurnally than nocturnally. Collared peccary densities are relatively high at La Selva compared to other Neotropical sites, with the exception of Barro Colorado Island. We combined our data with a review of the historical literature to assess changes in the populations of peccaries in the Caribbean lowlands. We found that collared peccaries have likely increased in abundance at La Selva, seemingly a few years after the extirpation of white-lipped peccaries (Tayassu pecari), which were abundant in the area 40-50 years ago. An understanding of the group dynamics, behavior, and habitat preference of collared peccaries is essential for management decisions and conservation efforts. Additionally, assessment of population changes should be carefully considered in a historical context, with a particular focus on how the populations of the 2 peccary species have changed, and how these species might differentially affect their environment.

Vrindavani is an Indian composite cattle breed developed by crossbreeding taurine dairy breeds with native indicine cattle. The constituent breeds were selected for higher milk production and adaptation to the tropical climate. However, the selection response for production and adaptation traits in the Vrindavani genome is not explored. In this study, we provide the first overview of the selection signatures in the Vrindavani genome. A total of 96 Vrindavani cattle were genotyped using the BovineSNP50 BeadChip and the SNP genotype data of its constituent breeds were collected from a public database. Within-breed selection signatures in Vrindavani were investigated using the integrated haplotype score (iHS). The Vrindavani breed was also compared to each of its parental breeds to discover between-population signatures of selection using two approaches, cross-population extended haplotype homozygosity (XP-EHH) and fixation index (FST). We identified 11 common regions detected by more than one method harboring genes such as LRP1B, TNNI3K, APOB, CACNA2D1, FAM110B, and SPATA17 associated with production and adaptation. Overall, our results suggested stronger selective pressure on regions responsible for adaptation compared to milk yield.