We have investigated the transport mechanism of the inks most typically used in dip-pen nanolithography by patterning both 16-mercaptohexadecanoic acid (MHDA) and 1-octadecanethiol (ODT) on the same Au{111} substrate. Several pattern geometries were used to probe ink transport from the tip to the sample during patterning of both dots (stationary tip) and lines (moving tip). When ODT was written on top of a pre-existing MHDA structure, the ODT was observed at the outsides of the MHDA structure, and the transport rate increased. In the reverse case, the MHDA was also observed on the outsides of the previously patterned ODT features; however, the transport rate was reduced. Furthermore, the shapes of pre-existing patterns of one ink were not changed by deposition of the other ink. These results highlight the important role hydrophobicity plays, both of the substrate as well as of the inks, in determining transport properties and thereby patterns produced in dip-pen nanolithography.

Separated domains of 1-dodecanethiolate were fabricated via solution displacement of preformed 1-adamantanethiolate self-assembled monolayers on Au{111}. Subsequently, the 1-adamantanethiolate domains were desorbed selectively, and the substrate was exposed to a 1-octanethiol solution, creating artificially separated self-assembled monolayers of 1-dodecanethiolate and 1-octanethiolate. The molecular order of each lattice type and the apparent height differences imaged with scanning tunneling microscopy and the two distinct cathodic peaks observed with cyclic voltammetry indicated distinct separated domains of each lattice type in the separated self-assembled monolayers. By manipulating the intermolecular interaction strengths of the patterned molecules, we are able to control the structure and properties of the separated self-assembled monolayers via the exploitation of competitive adsorption and the utilization of electrochemical processing, which can be extended to other self-assembly patterning techniques such as microdisplacement printing.

By patterning with dip-pen nanolithography using tip dwell times ranging from 15 s to 2 h over a period of 19 h, we show that the transport rate for smaller patterns is different than for larger ones. This transport behavior is found for both 1-octadecanethiol (ODT) and 16-mercaptohexadecanoic acid (MHDA) inks on gold substrates. Additionally, MHDA shows an overall decrease in transport rate as a function of total writing time during such experiments. These results indicate that measurements with short dwell times are insufficient to determine transport rates for larger features.