BackgroundAccess to palliative care is a key quality metric which most healthcare organizations strive to improve. The primary challenges to increasing palliative care access are a combination of physicians over-estimating patient prognoses, and a shortage of palliative staff in general. This, in combination with treatment inertia can result in a mismatch between patient wishes, and their actual care towards the end of life.MethodsIn this work, we address this problem, with Institutional Review Board approval, using machine learning and Electronic Health Record (EHR) data of patients. We train a Deep Neural Network model on the EHR data of patients from previous years, to predict mortality of patients within the next 3-12 month period. This prediction is used as a proxy decision for identifying patients who could benefit from palliative care.ResultsThe EHR data of all admitted patients are evaluated every night by this algorithm, and the palliative care team is automatically notified of the list of patients with a positive prediction. In addition, we present a novel technique for decision interpretation, using which we provide explanations for the model’s predictions.ConclusionThe automatic screening and notification saves the palliative care team the burden of time consuming chart reviews of all patients, and allows them to take a proactive approach in reaching out to such patients rather then relying on referrals from the treating physicians.
Abstract-Improving the quality of end-of-life care for hospitalized patients is a priority for healthcare organizations. Studies have shown that physicians tend to over-estimate prognoses, which in combination with treatment inertia results in a mismatch between patients wishes and actual care at the end of life . We describe a method to address this problem using Deep Learning and Electronic Health Record (EHR) data, which is currently being piloted, with Institutional Review Board approval, at an academic medical center. The EHR data of admitted patients are automatically evaluated by an algorithm, which brings patients who are likely to benefit from palliative care services to the attention of the Palliative Care team. The algorithm is a Deep Neural Network trained on the EHR data from previous years, to predict all-cause 3-12 month mortality of patients as a proxy for patients that could benefit from palliative care. Our predictions enable the Palliative Care team to take a proactive approach in reaching out to such patients, rather than relying on referrals from treating physicians, or conduct time consuming chart reviews of all patients. We also present a novel interpretation technique which we use to provide explanations of the model's predictions.
We develop an algorithm that accurately detects Atrial Fibrillation (AF) episodes from photoplethysmograms (PPG) recorded in ambulatory free-living conditions. We collect and annotate a dataset containing more than 4000 hours of PPG recorded from a wrist-worn device. Using a 50-layer convolutional neural network, we achieve a test AUC of 95% and show robustness to motion artifacts inherent to PPG signals. Continuous and accurate detection of AF from PPG has the potential to transform consumer wearable devices into clinically useful medical monitoring tools. * indicates equal contribution arXiv:1811.07774v2 [physics.med-ph]
Objective To analyze the impact of factors in healthcare delivery on the net benefit of triggering an Advanced Care Planning (ACP) workflow based on predictions of 12-month mortality. Materials and Methods We built a predictive model of 12-month mortality using electronic health record data and evaluated the impact of healthcare delivery factors on the net benefit of triggering an ACP workflow based on the models’ predictions. Factors included nonclinical reasons that make ACP inappropriate: limited capacity for ACP, inability to follow up due to patient discharge, and availability of an outpatient workflow to follow up on missed cases. We also quantified the relative benefits of increasing capacity for inpatient ACP versus outpatient ACP. Results Work capacity constraints and discharge timing can significantly reduce the net benefit of triggering the ACP workflow based on a model’s predictions. However, the reduction can be mitigated by creating an outpatient ACP workflow. Given limited resources to either add capacity for inpatient ACP versus developing outpatient ACP capability, the latter is likely to provide more benefit to patient care. Discussion The benefit of using a predictive model for identifying patients for interventions is highly dependent on the capacity to execute the workflow triggered by the model. We provide a framework for quantifying the impact of healthcare delivery factors and work capacity constraints on achieved benefit. Conclusion An analysis of the sensitivity of the net benefit realized by a predictive model triggered clinical workflow to various healthcare delivery factors is necessary for making predictive models useful in practice.
Accurate and efficient identification of complex chronic conditions in the electronic health record (EHR) is an important but challenging task that has historically relied on tedious clinician review and oversimplification of the disease. Here we adapt methods that allow for automated “noisy labeling” of positive and negative controls to create a “silver standard” for machine learning to automate identification of systemic lupus erythematosus (SLE). Our final model, which includes both structured data as well as text processing of clinical notes, outperformed all existing algorithms for SLE (AUC 0.97). In addition, we demonstrate how the probabilistic outputs of this model can be adapted to various clinical needs, selecting high thresholds when specificity is the priority and lower thresholds when a more inclusive patient population is desired. Deploying a similar methodology to other complex diseases has the potential to dramatically simplify the landscape of population identification in the EHR. MeSH terms Electronic Health Records, Machine Learning, Lupus Erythematosus, Phenotype, Algorithms
We present Natural Gradient Boosting (NG-Boost), an algorithm which brings probabilistic prediction capability to gradient boosting in a generic way. Predictive uncertainty estimation is crucial in many applications such as healthcare and weather forecasting. Probabilistic prediction, which is the approach where the model outputs a full probability distribution over the entire outcome space, is a natural way to quantify those uncertainties. Gradient Boosting Machines have been widely successful in prediction tasks on structured input data, but a simple boosting solution for probabilistic prediction of real valued outputs is yet to be made. NGBoost is a gradient boosting approach which uses the Natural Gradient to address technical challenges that makes generic probabilistic prediction hard with existing gradient boosting methods. Our approach is modular with respect to the choice of base learner, probability distribution, and scoring rule. We show empirically on several regression datasets that NG-Boost provides competitive predictive performance of both uncertainty estimates and traditional metrics.
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