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a b s t r a c tEstuarine meiofauna communities have been only recently considered to be good indicators of ecological quality, exhibiting several advantages over macrofauna, such as their small size, high abundance, rapid generation times and absence of a planktonic phase. In estuaries we must account not only for a great natural variability along the estuarine gradient (e.g. sediment type and dynamics, oxygen availability, temperature and flow speed) but also for the existence of anthropogenic pressures (e.g. high local population density, presence of harbors and dredging activities).Spatial and temporal biodiversity patterns of meiofauna and free-living marine nematodes were studied in the Mondego estuary (Portugal). Both taxonomic and functional approaches were applied to nematode communities in order to describe the community structure and to relate it with the environmental parameters along the estuary. At all sampling events, nematode assemblages reflected the estuarine gradient, and salinity and grain size composition were confirmed to be the main abiotic factors controlling the distribution of the assemblages.Moreover, the low temporal variability may indicate that natural variability is superimposed by the anthropogenic pressures present in some areas of the estuary. The characterization of both meiofauna and nematode assemblages highlighted the usefulness of the integration of both taxonomic and functional attributes, which must be taken into consideration when assessing the ecological status of estuaries.

a b s t r a c tThis study investigated the spatial distribution of subtidal nematode communities along the salinity gradients of two Portuguese estuaries exposed to different degrees of anthropogenic stress: the Mira and the Mondego.The nematode communities were mainly composed of Sabatieria, Metachromadora, Daptonema, Anoplostoma, Sphaerolaimus and Terschellingia species, closely resembling the communities of Northern European estuaries. In both estuaries, nematode density and community composition followed the salinity gradient, naturally establishing three distinct estuarine sections: (i) freshwater and oligohaline -characterised by the presence of freshwater nematodes, low nematode density and diversity; (ii) mesohaline -dominated by Terschellingia, Sabatieria and Daptonema, with low total density and diversity; and (iii) polyhaline and euhaline -where nematodes reached the highest density and diversity, and Paracomesoma, Synonchiella, and Odontophora were dominant.Despite the similarities in community composition and total nematode density, the proportion of different nematode feeding types were remarkably different in the two estuaries. In Mira, selective deposit feeders were dominant in the oligohaline section, while non-selective deposit feeders were dominant in the other sections. On the contrary, in the Mondego estuary, epigrowth-feeders and omnivores/predators were dominant in the freshwater sections and in the euhaline sector of the southern arm.Differences observed along each estuarine gradient were much stronger than overall differences between the two estuaries. In the Mondego estuary, the influence of anthropogenic stressors seemed not to be relevant in determining the nematodes' spatial distribution patterns, therefore suggesting that mesoscale variability responded essentially to natural stressors, characteristic of estuarine gradients. Nevertheless, the proportion of the different feeding types was different between the two estuaries, indicating that the response of nematode feeding guilds is able to reflect anthropogenic-induced stress and can be useful in assessing biological quality in transitional waters ecosystems.

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The spatial variation in abundance and composition of subtidal meiobenthos communities was studied in two Portuguese estuaries under distinct degrees of anthropogenic pressure. Samples were collected from 20 sampling stations along both estuarine gradients from freshwater (<0.5) to euhaline areas (>30). Of these stations 11 were located in the Mondego estuary, a system exposed to high anthropogenic stress, and 9 in the Mira estuary, a naturally stressed system located inside the Natural Park ‘Costa Vicentina’ (south-western coast of Portugal).Total meiobenthos density was higher in the Mira estuary and in both estuaries the community was dominated by nematodes. Among the twelve taxa identified in the Mira estuary, Harpacticoid copepods and Polychaeta were the second and the third most abundant groups respectively. In the Mondego estuary, Polychaeta was the second while Harpacticoid copepods was the third most abundant group in the thirteen total taxa recorded.Estuarine gradients of salinity, particles size and water nutrients were clearly detected in both estuaries and there was significant spatial heterogeneity in abundance and composition of the subtidal meiobenthos communities along these environmental gradients. Accordingly, three distinct sections were identified in both estuaries: (i) freshwater sections, where total density, and density of nematodes and Harpacticoid copepods reached minimum values; (ii) oligohaline and mesohaline sections, where the total density was low and diversity was poor; and (iii) polyhaline and euhaline sections, where both total density and diversity reached the highest values.The similar spatial distribution of meiobenthos assemblages in both estuaries suggests that natural stressors may be the major factors controlling the physicochemical conditions that determine meiobenthos community patterns. The mesoscale variability of subtidal meiobenthos density and composition within estuaries (in the order of kilometres) seems to be more important than the variability between estuaries (at the scale of hundreds of kilometres), a common feature in intertidal systems. From the management point of view, these results, based on higher taxa resolution, represent an obvious constraint to the applicability of ecological quality evaluation tools.

Evidence of Bartonella spp., Rickettsia spp. and Anaplasma phagocytophilum in domestic, shelter and stray cat blood and fleas,

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