Small non-volant mammals (marsupials and small rodents) were captured at three different timepoints from 23 forest fragments across three municipalities (Alta Floresta, Sinop and Cláudia) covering the Amazonian biome of the Mato Grosso State in Midwestern Brazil. The animal tissues (liver and spleen) and blood were screened using molecular tools for the detection of Babesia, Coxiella, Cytauxzoon, Hepatozoon, Theileria, and Anaplasmataceae agents. A total of 230 specimens (78 rodents and 152 marsupials) were trapped. Hepatozoon and Piroplasmorida agents were detected in the common opossums (Didelphis marsupialis). In turn, all samples (blood, liver, or spleen) collected from the small mammals were negative for the genus Coxiella and the family Anaplasmataceae, as detected by polymerase chain reaction (PCR). Phylogenetic analyses inferred from partial sequences of the 18S rRNA gene highlighted the occurrence of new Hepatozoon and Piroplasmorida haplotypes. Future studies determining the role of common opossum (D. marsupialis) in the epidemiological cycles of Hepatozoon and Babesia under natural conditions in the Amazonian biome are necessary.

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In the present study, samples of tick, tissue and blood from free-living wild small mammals (rodents and marsupials) captured in two municipalities from the Amazon biome of the Mato Grosso state, were molecularly tested for rickettsial infection. A total of 148 mammal specimens (46 rodents and 102 marsupials) were trapped, and 2,700 Amblyomma ticks (2,000 larvae and 700 nymphs) were collected. Ticks were recognized into four Amblyomma species: Amblyomma cajennense sensu stricto, Amblyomma coelebs, Amblyomma humerale, and Amblyomma scalpturatum, with new data for tick-host associations from small mammals in the Amazon biome. All tissue and blood samples of small mammals tested by PCR for rickettsial detection were negative. However, concerning tick-Rickettsia associations, Rickettsia amblyommatis was detected in all four tick species identified in the present study, being the first record for A. scalpturatum ticks. Furthermore, an uncharacterized species of Rickettsia belonging to the spotted fever group was detected in A. humerale as well.

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