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Epiphytic dinoflagellates were studied in 250 samples from 10 sites in Chelem (a semi-enclosed mangrove lagoon) and Dzilam de Bravo (an exposed coastal locality), on the northern coast of the Yucatan Peninsula, during five surveys in [2008][2009]. Temperature, salinity, turbidity, pH, dissolved oxygen, nitrates, nitrites, phosphates, silicates, urea, extractable water column chlorophyll-a, precipitation, and wind speed and direction were measured. The Chelem lagoon system showed minor variability in physical-chemical characteristics compared to the exposed site at Dzilam de Bravo. Dinoflagellates were associated with all the host macrophytes examined including four seagrass species and 33 macroalgal species representing 24 genera. A total of 20 dinoflagellate taxa from 12 genera were recovered from these substrates. The genus Prorocentrum contained the largest number of individual species. The variation in mean epiphytic dinoflagellate abundance over both localities ranged from ~200 to 3500 cells g -1 substrate wet weight. Cell abundances at individual sites, in contrast, ranged from ~100 to >25 000 cells g -1 substrate wet weight. This variation is typical of the patchy distribution of these species in time and space.

Based on long-term monitoring (2001-2012) and four oceanographic cruises (2010-2012) in the coastal and shelf waters of the Yucatan Peninsula, SE Gulf of Mexico, a list of 306 strictly phytoplanktonic and tychoplanktonic species from 131 genera is presented: centric diatoms (83 species), raphid diatoms (47), araphid diatoms (22), Dinoflagellata (124), Cyanoprokaryota (18), Ebriacea (2), Chlorophyceae (3), Dictyochophyceae (2), Euglenophyceae (2), Cryptophyceae (1), Prymnesiophyceae (1), and Raphidophyceae (1). Diatoms also dominated the number of genera (80) followed by dinoflagellates (39) and cyanobacteria (11). The genera most abundant in species were Chaetoceros Ehrenb. (23 species), Protoperidinium Bergh (23) and Ceratium Schrank (17). The relative richness in species of the genus Oxytoxum (11 species) is related to the tropical affiliation of the phytoplankton community. Most of the tychoplanktonic diatoms (57 species out of a total of 152 diatoms, or 37.5%) were observed principally from coastal samplings. Eighteen potentially toxic species were found.

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