Biologically available nitrogen is removed from ecosystems through the microbial processes of anaerobic ammonium oxidation (anammox) or denitrification, while dissimilatory nitrate reduction to ammonium (DNRA) retains it. A mechanistic understanding of controls on partitioning among these pathways is currently lacking. The objective of this study was to conduct a manipulative experiment to determine the influence of organic carbon and nitrate loading on partitioning. Sediment was collected from a location on the southern New England shelf (78 m water depth) and sieved. Half of the sediment was mixed with freeze-dried phytoplankton and the other half was not. Sediment was then spread into 1.5 mm, "thin discs" closed at the bottom and placed in large aquarium tanks with filtered, N 2 /CO 2 sparged seawater to maintain oxygen limited conditions. Half of the discs received high nitrate loading, while the other half received low nitrate loading, resulting in a multifactorial design with four treatments: no C addition, low nitrate (-C-N); C addition, low nitrate (+C-N); no C addition, high nitrate (-C+N); and C addition, high nitrate (+C+N). Sediment discs were incubated in the tanks for 7 weeks, during which time inorganic N (ammonium, nitrate, and nitrite) was monitored, and sediment discs were periodically removed from the tanks to conduct 15 N isotope labeling experiments in vials to measure potential rates of anammox, denitrification, and DNRA. Temporal dynamics of inorganic N concentrations in the tanks were indicative of anoxic N metabolism, with strong response of the build up or consumption of the intermediate nitrite, depending on treatments. Vial incubation experiments with added 15 NO 2-+ 14 NH 4 + indicated significant denitrification and DNRA activity in sediment thin discs, but incubations with added

Understanding the processes influencing the sources and fate of organic matter (OM) in estuaries is important for quantifying the contributions of carbon from land and rivers to the global carbon budget of the coastal ocean. Estuaries are sites of high OM production and processing, and understanding biogeochemical processes within these regions is key to quantifying organic carbon (Corg) budgets at the land-ocean margin. These regions provide vital ecological services, including nutrient filtration and protection from floods and storm surge, and provide habitat and nursery areas for numerous commercially important species. Human activities have modified estuarine systems over time, resulting in changes in the production, respiration, burial, and export of Corg. Corg in estuaries is derived from aquatic, terrigenous, and anthropogenic sources, with each source exhibiting a spectrum of ages and lability. The complex source and age characteristics of Corg in estuaries complicate our ability to trace OM along the river-estuary-coastal ocean continuum. This review focuses on the application of organic biomarkers and compound-specific isotope analyses to estuarine environments and on how these tools have enhanced our ability to discern natural sources of OM, trace their incorporation into food webs, and enhance understanding of the fate of Corg within estuaries and their adjacent waters.

The processes that convert bioavailable inorganic nitrogen to inert nitrogen gas are prominent in continental shelf sediments and represent a critical global sink, yet little is known of these pathways in the Arctic where 18% of the world's continental shelves are located. Moreover, few data from the Arctic exist that separate loss processes like denitrification and anaerobic ammonium oxidation (anammox) from recycling pathways like dissimilatory nitrate reduction to ammonium (DNRA) or source pathways like nitrogen fixation. Here we present measurements of these co-occurring processes using 15N tracers. Denitrification was heterogeneous among stations and an order of magnitude greater than anammox and DNRA, while nitrogen fixation was undetectable. No abiotic factors correlated with interstation variability in biogeochemical rates; however, bioturbation potential explained most of the variation. Fauna-enhanced denitrification is a potentially important but overlooked process on Arctic shelves and highlights the role of the Arctic as a significant global nitrogen sink.

High nutrient loading to coastal bays is often accompanied by the presence of bloomforming macroalgae, which take up and sequester large amounts of C and N while growing. This pool is temporary, however, as nuisance macroalgae exhibit a bloom and die-off cycle, influencing the biogeochemical functioning of these systems in unknown ways. The objective of this study was to trace the C and N from senescing macroalgae into relevant sediment pools. A macroalgal die-off event was simulated by the addition of freeze-dried macroalgae (Gracilaria spp.), pre-labeled with stable isotopes ( 13 C and 15 N), to sediment mesocosms. The isotopes were traced into bulk sediments and partitioned into benthic microalgal (BMA) and bacterial biomass using microbial biomarkers to quantify the uptake and retention of macroalgal C and N. Bulk sediments took up label immediately following the die-off, and macroalgal C and N were retained in the sediments for at least 2 wk. Approximately 6 to 50% and 2 to 9% of macroalgal N and C, respectively, were incorporated into the sediments. Label from the macroalgae appeared in both bacterial and BMA biomarkers, suggesting that efficient shuttling of macroalgal C and N between these communities may serve as a mechanism for retention of macroalgal nutrients within the sediments. KEY WORDS: Stable isotopes · Macroalgae · Benthic microalgae · Bacteria · Biomarker · Coastal eutrophication Resale or republication not permitted without written consent of the publisherMar Ecol Prog Ser 414: [41][42][43][44][45][46][47][48][49][50][51][52][53][54][55] 2010 Studies of macroalgal bloom decay have demonstrated rapid breakdown of biomass, resulting in release of both inorganic and organic nutrients to the water column (Buchsbaum et al. 1991, Castaldelli et al. 2003, García-Robledo et al. 2008, supporting phytoplankton and bacterial metabolism , Nedergaard et al. 2002. Fewer studies have focused on macroalgal decay within the sediments (Nedergaard et al. 2002, Lomstein et al. 2006, Rossi 2007, García-Robledo et al. 2008, where heterotrophic bacterial densities are significantly higher than in the water column (Deming & Baross 1993, Schmidt et al. 1998, Ducklow 2000. In addition, most of the sediment studies have been conducted in low or no light environments, even though light is typically available to shallow sediments where macroalgal die-offs occur and sediment biogeochemistry is largely affected by benthic microalgal (BMA) activity (Underwood & Kromkamp 1999). While nutrients associated with senescent macroalgal blooms are recycled and can have a positive feedback on phytoplankton production in the water column, nutrients released during macroalgal decay in the sediments may support BMA and bacterial production, which could intercept the return of nutrients to the overlying water column. Thus if shallow-water sediments behave as a nutrient filter, the response by phytoplankton may be reduced, and benthic production could effectively buffer the system from further eutrophication. In order to be...

Microphytobenthos and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and microphytobenthos on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (~ 16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g., L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ~ 1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of microphytobenthos (i.e., light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24%, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of microphytobenthos. The presence of macroalgae decreased SOM lability as well, which resulted in diminished buildup of bacterial biomass. By the final day of the experiment, principal component analysis revealed that sediment composition in treatments with macroalgae was more similar to dark treatments and less similar to light treatments without macroalgae. Overall, microphytobenthos and benthic macroalgae fundamentally altered SOM quality and quantity, which may have notable ecological consequences for shallow-water systems such as increased hypoxia/anoxia, sulfide accumulation, enhanced mineralization and/or stimulated denitrification

We tracked carbon (C) and nitrogen (N) uptake into sediments in the presence and absence of benthic macroalgae using dual stable isotope tracers in combination with compound‐specific isotope analyses of hydrolyzable amino acids and phospholipid‐linked fatty acids to quantify the uptake and retention of C and N within bulk sediments, benthic microalgae (BMA), and heterotrophic bacteria. Stable isotope tracers (as 15NH+4 and H13CO−3) were added to mesocosms either via the surface water or pore water for the first 14 d of the 42‐d experiment. Macroalgae and sediments exposed to ambient light and dark cycles rapidly took up label from both sources and retained label for at least 4 weeks after isotope additions ended. BMA dominated sediment uptake of 13C and 15N, initially accounting for 100% of total uptake. Over time, heterotrophic bacterial uptake became relatively more important, increasing from 0% on day 1 to 20–50% on day 42, indicating a close coupling between BMA and bacterial production. In treatments with macroalgae, sediment 13C and 15N uptake was ∼ 40% lower than treatments without macroalgae, likely because of shading of the sediment surface by macroalgae, which decreased BMA production, which in turn decreased bacterial production. Overall, sediments served as a sink for C and N through uptake and retention by the microbial community, but retention was lower in the presence of macroalgae.

Tropical cyclones are major disturbances for coastal systems. Hurricane Harvey made landfall in Texas, USA, on August 25, 2017 as a category 4 storm. There were two distinct disturbances associated with this storm that were spatially decoupled: (1) high winds causing direct damage and storm surge, and (2) high rains causing scouring floods and significant discharge of fresh water carrying carbon and nutrients to estuaries. Here, we provide a synthesis of the effects of Hurricane Harvey on biogeochemical, hydrographic, and biotic components of freshwater and estuarine systems and their comparative resistance and resilience to wind-and rain-driven disturbances. Wind-driven disturbances were most severe along the coastal barrier islands and lower estuaries, damaging mangroves and seagrass and increasing sediment coarseness. Rain-driven disturbances were most pronounced within freshwater streams and the upper estuaries. Large volumes of freshwater run-off reduced the abundance of riverine fauna and caused hypoxic and hyposaline conditions in the estuaries for over a week. In response to this freshwater input event, benthic fauna diversity and abundance decreased, but mobile fauna such as estuarine fishes did not markedly change. Although hydrographic and biogeochemical components were highly perturbed, they returned to baseline conditions within days. In contrast, biotic components demonstrated lower magnitude changes, but some of these organisms, particularly the sedentary flora and fauna, required weeks to months to return to pre-storm conditions, and some did not recover within the 6 months reported here. Our synthesis illustrates that resistance and resilience of system components may negatively co-vary and that structural components of coastal systems may be the most vulnerable to long-term changes following tropical cyclones.

Defining surface water systems as lentic or lotic is an important first step in linking hydrology and ecology. Existing approaches for classifying surface water as lentic (reservoir‐like) or lotic (river‐like) use qualitative observations, solitary snapshot measurements in time and space, or ecologic metrics that are not broadly repeatable. This study introduces the Freshwater Continuum Classification (FCC), a quantitative method to consistently and objectively classify lentic/lotic systems based on integrated residence time (iTR), the time incoming water would take to exit the system given observed temporal variations in the system's discharge and volume. Lentic/lotic classification is determined from comparison of median iTR with critical flow thresholds related to key time scales such as zooplankton generation. Some systems switch between lentic and lotic behaviors over time, which are additionally defined in the FCC as oscillic. Pilot application of the FCC to 15 tidally influenced river segments along the Texas Gulf Coast produced good agreement with previous methods of determining lentic/lotic character. The FCC defined 8 of 15 tidal reaches as primarily lentic, 6 as intermediate, and 1 as lotic between October 2007 and March 2015. Of the 15 reaches, 9 were also oscillic, characterized in this climate by short‐lived lotic character during flash floods. The FCC provides a broadly applicable, repeatable, quantitative method to classify surface water bodies as lentic/intermediate/lotic and oscillic/nonoscillic regardless of size or nature (e.g., river or reservoir) based on system volume and flow characteristics.