BackgroundComputational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity.ResultsbioSyntax (https://biosyntax.org/) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace.ConclusionbioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.Electronic supplementary materialThe online version of this article (10.1186/s12859-018-2315-y) contains supplementary material, which is available to authorized users.
Abstract:Computational biology requires the reading and comprehension of biological data files.Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information that is obfuscated by the complexity of the data structures. bioSyntax (http://bioSyntax.org) is a freely available suite of syntax highlighting packages for vim, gedit, Sublime, and less, which aids computational scientists to parse and work with their data more efficiently.
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