Haplotype networks are commonly used for representing associations between sequences, yet there is currently no straightforward way to create optimal layouts. Automated optimal layouts are particularly useful not only because of the time-saving element but also because they avoid both human error and human-induced biases in the presentation of figures. HapStar directly uses the network connection output data generated from Arlequin (or a simple user-generated input file) and uses a force-directed algorithm to automatically lay out the network for easy visualization. In addition, this program is able to use the alternative connections generated by Arlequin to create a minimum spanning tree. HapStar provides a straightforward user-friendly interface, and publication-ready figures can be exported simply. HapStar is freely available (under a GPLv3 licence) for download for MacOSX, UNIX and Windows, at http://fo.am/hapstar.
Ranaviruses are causing mass amphibian die-offs in North America, Europe and Asia, and have been implicated in the decline of common frog (Rana temporaria) populations in the UK. Despite this, we have very little understanding of the environmental drivers of disease occurrence and prevalence. Using a long term (1992-2000) dataset of public reports of amphibian mortalities, we assess a set of potential predictors of the occurrence and prevalence of Ranavirus-consistent common frog mortality events in Britain. We reveal the influence of biotic and abiotic drivers of this disease, with many of these abiotic characteristics being anthropogenic. Whilst controlling for the geographic distribution of mortality events, disease prevalence increases with increasing frog population density, presence of fish and wild newts, increasing pond depth and the use of garden chemicals. The presence of an alternative host reduces prevalence, potentially indicating a dilution effect. Ranavirosis occurrence is associated with the presence of toads, an urban setting and the use of fish care products, providing insight into the causes of emergence of disease. Links between occurrence, prevalence, pond characteristics and garden management practices provides useful management implications for reducing the impacts of Ranavirus in the wild.
Historically, hatcheries in Europe and North America attempted to contribute to the conservation and enhancement of clawed lobster stocks, but lacked monitoring programmes capable of assessing success. In the 1990s, this perspective was changed by the results of restocking and stock enhancement experiments that inserted microwire tags into hatchery-reared juvenile European lobsters (Homarus gammarus) before release. This allowed recapture in sufficient numbers to prove that lobsters had survived and recruited to the mature fishable stock. However, evidence of recruitment still failed to answer key questions about the ultimate ecological and economic benefits. As a result, a growing number of lobster stocking ventures remain hindered by a lack of clear evidence of the effects of their stocking schemes. This review evaluates these experiments and related studies on other fished species, summarizes key findings, and identifies data and knowledge gaps. Although studies of fitness in cultured lobsters provide some of the most encouraging results from the wider field of hatchery-based stocking, the limitations of physical tagging technology have significantly hindered appraisals of stocking impacts. We lack basic knowledge of lobster ecology and population dynamics, especially among prerecruits, and of the impact of stocking on wild lobster population genetics. We advocate the use of genetic methods to further our understanding of population structure, rearing processes, and stocking success. We also recommend that more focused and comprehensive impact assessments are required to provide a robust endorsement or rejection of stocking as a viable tool for the sustainable management of lobster fisheries.
Amphibians are experiencing global declines and extinctions, with infectious diseases representing a major factor. In this study we examined the transcriptional response of metamorphic hosts (common frog, Rana temporaria) to the two most important amphibian pathogens: Batrachochytrium dendrobatidis (Bd) and Ranavirus. We found strong up-regulation of a gene involved in the adaptive immune response (AP4S1) at four days post-exposure to both pathogens. We detected a significant transcriptional response to Bd, covering the immune response (innate and adaptive immunity, complement activation, and general inflammatory responses), but relatively little transcriptional response to Ranavirus. This may reflect the higher mortality rates found in wild common frogs infected with Ranavirus as opposed to Bd. These data provide a valuable genomic resource for the amphibians, contribute insight into gene expression changes after pathogen exposure, and suggest potential candidate genes for future host-pathogen research.
This paper discusses social prescribing as part of the wider NHS England universal personalised care model, and it describes how community nurses can engage with social prescribing systems to support community resilience. A case study based on the example of gardening, as a nature-based social prescription provided by the RHS Bridgewater Wellbeing Garden, is provided to illustrate the scope, reach and impact of non-medical, salutogenic approaches for community practitioners. The authors argue that social prescribing and, in particular, nature-based solutions, such as gardening, can be used as a non-medical asset-based approach by all health professionals working in the community as a way to promote health and wellbeing. They consider how the negative impact of social distancing resulting from COVID-19 restrictions could be diluted through collaboration between a holistic, social prescribing system and community staff. The paper presents a unique perspective on how community nurses can collaborate with link workers through social prescribing to help combat social isolation and anxiety and support resilience.
High indoor CO 2 concentrations and low relative humidity (RH) create an array of well-documented human health issues. Therefore, assessing houseplants' potential as a low-cost approach to CO 2 removal and increasing RH is important. We investigated how environmental factors such as 'dry' (< 0.20 m 3 of water per m 3 of substrate, m 3 m-3) or 'wet' (> 0.30 m 3 m-3) growing substrates, and indoor light levels ('low' 10 µmol m-2 s-1 , 'high' 50 µmol m-2 s-1 and 'very high' 300 µmol m-2 s-1), influence the plants' net CO 2 assimilation ('A') and water-vapour loss. Seven common houseplant taxa-representing a variety of leaf types and sizes-were studied for their ability to assimilate CO 2 across a range of indoor light levels. Additionally, to assess the plants' potential contribution to RH increase, the plants' evapotranspiration (ET) was measured. At typical 'low' indoor light levels 'A' rates were generally low (< 3.9 mg hr-1). Differences between 'dry' and 'wet' plants at typical indoor light levels were negligible in terms of room-level impact. Light compensation points (i.e. the light level where the CO 2 assimilation equals zero) were in the typical indoor light range (1-50 µmol m-2 s-1) only for two studied Spathiphyllum wallisii cultivars and Hedera helix; these plants would thus provide the best CO 2 removal indoors. Additionally, increasing indoor light levels to 300 µmol m-2 s-1 would, in most species, significantly increase their potential to assimilate CO 2. Species which assimilated the most CO 2 also contributed most to increasing RH.
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