Contents 1. Hydrogen as an Energy Store 4366 1.1. The Hydrogen Half Cell Reaction 4367 1.2. Why Study Hydrogenases on an Electrode? 4368 1.3. Challenges and General Visionary Outlook 4369 2. Hydrogen and Its Redox Chemistry in Biology 4369 2.1. Hydrogen Cycling in Biology 4369 2.2. Types of Hydrogenases 4370 2.3. Redox Partners for [FeFe]-and [NiFe]-Hydrogenases 4372 2.3.1. In vivo Redox Partners 4372 2.3.2. In vitro Redox Partners 4372 2.4. Hydrogenase Structures: Biological Plumbing and Wiring 4373 2.4.1. Electron Relay Centers 4373 2.4.2. Gas Channels May Control the Activity of Hydrogenases 4373 2.5. Complexity of Hydrogenase States 4373 2.5.1. The Role of Protein Film Voltammetry in Navigating between States of Hydrogenases 4374 3. Dynamic Electrochemical Methods for Studying Hydrogenases 4374 3.1. Electrochemical Equipment 4374 3.1.1. The Importance of Controlling Mass Transport 4375 3.1.2. Gas Supply and Gas Purity 4376 3.1.3. Light Intensity 4376 3.2. Methods for Preparing Hydrogenase Films on Electrodes 4376 3.2.1. Direct Adsorption of Hydrogenase onto an Electrode 4377 3.2.2. Strategies for Entrapment and Attachment of Hydrogenases at Electrodes 4378 4. The Study of Enzymes by Protein Film Voltammetry 4379 4.1. How Reactions Are Induced by the Electrode Potential 4379 4.2. What Does Protein Film Voltammetry Reveal? 4379 4.3. Enzymes as Complex Electrocatalysts 4380 4.4. Differences between Characteristic Potential Values Measured by Potentiometry and by Catalytic Voltammetry 4381 5. Electrocatalytic Activity of Hydrogenases 4381 5.1. Ensuring the Electrochemistry Is Not Controlled by Transport of Substrate 4383 5.2. Effects of Interfacial Electron Transfer on the Electrocatalytic Wave Shape 4384 5.3. Catalytic Constants 5.4. Dependence of Activity on pH 5.5. Activity Comparison of Hydrogenases with Pt 5.6. Catalytic Bias: H 2 Oxidation vs H + Reduction 5.7. Rate-Determining Steps 5.7.1. H + /D 2 Exchange Experiments 4366

A new strategy is described for comparing, quantitatively, the ability of hydrogenases to tolerate exposure to O2 and anoxic oxidizing conditions. Using protein film voltammetry, the inherent sensitivities to these challenges (thermodynamic potentials and rates of reactions) have been measured for enzymes from a range of mesophilic microorganisms. In the absence of O2, all the hydrogenases undergo reversible inactivation at various potentials above that of the H+/H2 redox couple, and H2 oxidation activities are thus limited to characteristic "potential windows". Reactions with O2 vary greatly; the [FeFe]-hydrogenase from Desulfovibrio desulfuricans ATCC 7757, an anaerobe, is irreversibly damaged by O2, surviving only if exposed to O2 in the anaerobically oxidized state (which therefore affords protection). In contrast, the membrane-bound [NiFe]-hydrogenase from the aerobe, Ralstonia eutropha, reacts reversibly with O2 even during turnover and continues to catalyze H2 oxidation in the presence of O2.

The crystal structure of the membrane-bound O 2 -tolerant [NiFe]-hydrogenase 1 from Escherichia coli (EcHyd-1) has been solved in three different states: as-isolated, H 2 -reduced, and chemically oxidized. As very recently reported for similar enzymes from Ralstonia eutropha and Hydrogenovibrio marinus, two supernumerary Cys residues coordinate the proximal [FeS] cluster in EcHyd-1, which lacks one of the inorganic sulfide ligands. We find that the as-isolated, aerobically purified species contains a mixture of at least two conformations for one of the cluster iron ions and Glu76. In one of them, Glu76 and the iron occupy positions that are similar to those found in O 2 -sensitive [NiFe]-hydrogenases. In the other conformation, this iron binds, besides three sulfur ligands, the amide N from Cys20 and one Oϵ of Glu76. Our calculations show that oxidation of this unique iron generates the high-potential form of the proximal cluster. The structural rearrangement caused by oxidation is confirmed by our H 2 -reduced and oxidized EcHyd-1 structures. Thus, thanks to the peculiar coordination of the unique iron, the proximal cluster can contribute two successive electrons to secure complete reduction of O 2 to H 2 O at the active site. The two observed conformations of Glu76 are consistent with this residue playing the role of a base to deprotonate the amide moiety of Cys20 upon iron binding and transfer the resulting proton away, thus allowing the second oxidation to be electroneutral. The comparison of our structures also shows the existence of a dynamic chain of water molecules, resulting from O 2 reduction, located near the active site.[4Fe-3S] cluster | membrane-bound hydrogenase | Mössbauer spectroscopy | QM/MM | structure/function relationships

The capacity of metal-dependent fungal and bacterial polysaccharide oxygenases, termed GH61 and CBM33, respectively, to potentiate the enzymatic degradation of cellulose opens new possibilities for the conversion of recalcitrant biomass to biofuels. GH61s have already been shown to be unique metalloenzymes containing an active site with a mononuclear copper ion coordinated by two histidines, one of which is an unusual τ-N-methylated N-terminal histidine. We now report the structural and spectroscopic characterization of the corresponding copper CBM33 enzymes. CBM33 binds copper with high affinity at a mononuclear site, significantly stabilizing the enzyme. X-band EPR spectroscopy of Cu(II)-CBM33 shows a mononuclear type 2 copper site with the copper ion in a distorted axial coordination sphere, into which azide will coordinate as evidenced by the concomitant formation of a new absorption band in the UV/vis spectrum at 390 nm. The enzyme’s three-dimensional structure contains copper, which has been photoreduced to Cu(I) by the incident X-rays, confirmed by X-ray absorption/fluorescence studies of both aqueous solution and intact crystals of Cu-CBM33. The single copper(I) ion is ligated in a T-shaped configuration by three nitrogen atoms from two histidine side chains and the amino terminus, similar to the endogenous copper coordination geometry found in fungal GH61.

The enterobacterium Escherichia coli synthesizes two H 2 uptake enzymes, Hyd-1 and Hyd-2. We show using precise electrochemical kinetic measurements that the properties of Hyd-1 and Hyd-2 contrast strikingly, and may be individually optimized to function under distinct environmental conditions. Hyd-2 is well suited for fast and efficient catalysis in more reducing environments, to the extent that in vitro it behaves as a bidirectional hydrogenase. In contrast, Hyd-1 is active for H 2 oxidation under more oxidizing conditions and cannot function in reverse. Importantly, Hyd-1 is O 2 tolerant and can oxidize H 2 in the presence of air, whereas Hyd-2 is ineffective for H 2 oxidation under aerobic conditions. The results have direct relevance for physiological roles of Hyd-1 and Hyd-2, which are expressed in different phases of growth. The properties that we report suggest distinct technological applications of these contrasting enzymes.Hydrogenases catalyze the reversible cleavage of H 2 into protons and electrons, and play an important role in the energy metabolism of a broad range of microorganisms (1). Hydrogenases are classified according to their active site metal ion content, and three phylogenetically distinct classes have so far been identified: di-iron [FeFe]-, nickel-iron [NiFe]-, and mono-iron [Fe]-hydrogenases (1). Nickel-iron hydrogenases are the most abundant of the three types (1), and many members of this class are membrane bound, with the membrane-extrinsic domain consisting of a large subunit containing the active site, and a small subunit accommodating one to three electron-transferring iron-sulfur clusters. The active sites of [NiFe]-hydrogenases contain a nickel atom coordinated by four cysteine-S ligands, two of which bridge to an iron atom that is further coordinated by three unusual diatomic ligands, two cyanides and one carbonyl (2).Hydrogenases are inactivated by O 2

Protein film voltammetry studies of the [NiFeSe]-hydrogenase from Desulfomicrobium baculatum show it to be a highly efficient H2 cycling catalyst. In the presence of 100% H2, the ratio of H2 production to H2 oxidation activity is higher than for any conventional [NiFe]-hydrogenases (lacking a selenocysteine ligand) that have been investigated to date. Although traces of O2 (<< 1%) rapidly and completely remove H2 oxidation activity, the enzyme sustains partial activity for H2 production even in the presence of 1% O2 in the atmosphere. That H2 production should be partly allowed, whereas H2 oxidation is not, is explained because the inactive product of O2 attack is reductively reactivated very rapidly, but this requires a potential that is almost as negative as the thermodynamic potential for the 2H(+)/H2 couple. The study provides further encouragement and clues regarding the feasibility of microbial/enzymatic H2 production free from restrictions of anaerobicity.

This tutorial review describes studies of hydrogen production and oxidation by biological catalysts--metalloenzymes known as hydrogenases--attached to electrodes. It explains how the electrocatalytic properties of hydrogenases are studied using specialised electrochemical techniques and how the data are interpreted to allow assessments of catalytic rates and performance under different conditions, including the presence of O2, CO and H2S. It concludes by drawing some comparisons between the enzyme active sites and platinum catalysts and describing some novel proof-of-concept applications that demonstrate the high activities and selectivities of these 'alternative' catalysts for promoting H2 as a fuel.

An important clue to the mechanism for O(2) tolerance of certain [NiFe]-hydrogenases is the conserved presence of a modified environment around the iron-sulfur cluster that is proximal to the active site. The O(2)-tolerant enzymes contain two cysteines, located at opposite ends of this cluster, which are glycines in their O(2)-sensitive counterparts. The strong correlation highlights special importance for electron-transfer activity in the protection mechanism used to combat O(2). Site-directed mutagenesis has been carried out on Escherichia coli hydrogenase-1 to substitute these cysteines (C19 and C120) individually and collectively for glycines, and the effects of each replacement have been determined using protein film electrochemistry and electron paramagnetic resonance (EPR) spectroscopy. The "split" iron-sulfur cluster EPR signal thus far observed when oxygen-tolerant [NiFe]-hydrogenases are subjected to oxidizing potentials is found not to provide any simple, reliable correlation with oxygen tolerance. Oxygen tolerance is largely conferred by a single cysteine (C19), replacement of which by glycine removes the ability to function even in 1% O(2).