Sea turtles are distributed in tropical and subtropical seas worldwide. They play several ecological roles and are considered important indicators of the health of marine ecosystems. Studying epibiotic diatoms living on turtle shells suggestively has great potential in the study of turtle behavior because diatoms are always there. However, diatom identification at the species level is time consuming, requires well-trained specialists, and there is a high probability of finding new taxa growing on turtle shells, which makes identification tricky. An alternative approach based on DNA barcoding and high throughput sequencing (HTS), metabarcoding, has been developed in recent years to identify species at the community level by using a DNA reference library. The suitabilities of morphological and molecular approaches were compared. Diatom assemblages were sampled from seven juvenile green turtles (Chelonia mydas) from Mayotte Island, France. The structures of the epibiotic diatom assemblages differed between both approaches. This resulted in different clustering of the turtles based on their diatom communities. Metabarcoding allowed better discrimination between turtles based on their epibiotic diatom assemblages and put into evidence the presence of a cryptic diatom diversity. Microscopy, for its part, provided more ecological information of sea turtles based on historical bibliographical data and the abundances of ecological guilds of the diatom species present in the samples. This study shows the complementary nature of these two methods for studying turtle behavior.
In French Polynesia, both currently recognized manta ray species, Mobula alfredi and M. birostris, are observed. Despite being an important cultural asset and generating significant economic benefits through manta ray watching tourism, published data on the ecology and threats to these species in the region are scarce. Based on an 18-year dataset of sighting records collected by citizen scientists and during two scientific expeditions, this study provides the first insights into the population characteristics and regional distribution of the two manta ray species in French Polynesia. A total of 1347 manta ray photographs (1337 for M. alfredi and 10 for M. birostris) were examined for the period January 2001-December 2017, with photo-identification techniques leading to the successful identification of 317 individual M. alfredi and 10 individual M. birostris throughout the Society, Tuamotu and Marquesas Islands. We provide the first confirmation of sympatric distribution of both species in the Society Islands. Our results highlight strong and long-term site fidelity of M. alfredi individuals to certain aggregation sites (> 9 years for 16 individuals) and reveal some degree of connectivity between populations, with 10 individuals recorded moving between islands located up to 50 km apart. Analysis of photographs of individuals bearing sub-lethal injuries (n = 68) suggests that M. alfredi are more likely to be injured at inhabited islands (Maupiti or Bora Bora; 75% of all injured individuals) than at uninhabited islands, with 75% of injuries related to boat propeller strikes and fishing gear entanglements. Our findings emphasize the need for further research to allow for a comprehensive evaluation of population structure, size and threats to manta rays in this region.
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