Background: During the pretreatment of biomass feedstocks and subsequent conditioning prior to saccharification, many toxic compounds are produced or introduced which inhibit microbial growth and in many cases, production of ethanol. An understanding of the toxic effects of compounds found in hydrolysate is critical to improving sugar utilization and ethanol yields in the fermentation process. In this study, we established a useful tool for surveying hydrolysate toxicity by measuring growth rates in the presence of toxic compounds, and examined the effects of selected model inhibitors of aldehydes, organic and inorganic acids (along with various cations), and alcohols on growth of Zymomonas mobilis 8b (a ZM4 derivative) using glucose or xylose as the carbon source. Results: Toxicity strongly correlated to hydrophobicity in Z. mobilis, which has been observed in Escherichia coli and Saccharomyces cerevisiae for aldehydes and with some exceptions, organic acids. We observed Z. mobilis 8b to be more tolerant to organic acids than previously reported, although the carbon source and growth conditions play a role in tolerance. Growth in xylose was profoundly inhibited by monocarboxylic organic acids compared to growth in glucose, whereas dicarboxylic acids demonstrated little or no effects on growth rate in either substrate. Furthermore, cations can be ranked in order of their toxicity, Ca

Background: To develop pathways for advanced biofuel production, and to understand the impact of host metabolism and environmental conditions on heterologous pathway engineering for economic advanced biofuels production from biomass, we seek to redirect the carbon flow of the model ethanologen Zymomonas mobilis to produce desirable hydrocarbon intermediate 2,3-butanediol (2,3-BDO). 2,3-BDO is a bulk chemical building block, and can be upgraded in high yields to gasoline, diesel, and jet fuel.Results: 2,3-BDO biosynthesis pathways from various bacterial species were examined, which include three genes encoding acetolactate synthase, acetolactate decarboxylase, and butanediol dehydrogenase. Bioinformatics analysis was carried out to pinpoint potential bottlenecks for high 2,3-BDO production. Different combinations of 2,3-BDO biosynthesis metabolic pathways using genes from different bacterial species have been constructed. Our results demonstrated that carbon flux can be deviated from ethanol production into 2,3-BDO biosynthesis, and all three heterologous genes are essential to efficiently redirect pyruvate from ethanol production for high 2,3-BDO production in Z. mobilis. The down-selection of best gene combinations up to now enabled Z. mobilis to reach the 2,3-BDO production of more than 10 g/L from glucose and xylose, as well as mixed C6/C5 sugar streams derived from the deacetylation and mechanical refining process. Conclusions:This study confirms the value of integrating bioinformatics analysis and systems biology data during metabolic engineering endeavors, provides guidance for value-added chemical production in Z. mobilis, and reveals the interactions between host metabolism, oxygen levels, and a heterologous 2,3-BDO biosynthesis pathway. Taken together, this work provides guidance for future metabolic engineering efforts aimed at boosting 2,3-BDO titer anaerobically.

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Twelve isolates of thermophilic, acidophilic, cellulolytic bacteria were obtained from three different primary enrichment cultures from acidic hot springs at Yellowstone National Park, Wyo. The three isolates which had the highest cellulolytic activity, as shown by the diameter of clearing zones surrounding colonies on cellulose agar plates, were selected for intensive study. All were gram-variable, nonsporulating aerobic rods which formed no pigment. They grew at 37 to 65"C, with optimum growth at 55°C. The pH range for growth was 3.5 to 7, with an optimum pH of 5. The guanine-plus-cytosine content of the deoxyribonucleic acid was 60.7 k 0.6 mol%. The organisms are resistant to penicillin G at 100 pglml. They share several important features with Thermus strains, namely heterotrophic, aerobic, and thermophilic mode of growth; morphological features; sensitivity to lysozyme; and presence of catalase. They differ in other important aspects, such as the pattern of carbon sources utilized for growth, the pH and temperature profiles of growth, the pattern of sensitivity to antibiotics, the guanine-plus-cytosine content of DNA, the composition of amino acids in the cell walls, and the structure of the cell walls. Thermus species are very sensitive to penicillin G, whereas our strains are resistant. Our strains also are different, in important respects, from the genus Thermomicrobium. Therefore, we designate the organism Acidothermus ceZZuZoZyticus gen. nov., sp. nov., of which the type strain is our strain 11B, ATCC 43068.This research effort was undertaken as part of a research program on the production of fuel alcohol from cellulosic biomass materials. The driving hypothesis is that a thermophilic, acidophilic, cellulolytic bacterium can be grown in coculture with other thermotolerant microorganisms to produce ethanol at a high rate from cellulosic wastes. Alternatively, the cellulolytic organism could be used to produce cellulase, which could be added to a cellulose-containing culture of an organism which ferments glucose to ethanol.Most of the thermophilic, cellulolytic microorganisms isolated to date are sporeforming anaerobes belonging to the genus Clostridium. None of these are acidophilic, and all have an optimum pH near 7. Thus, they would not grow well under the acidic conditions (pH 3 to 5 ) prevalent in an ethanolic fermentation.Aerobic, thermophilic, cellulolytic microorganisms include several species of fungi (10) and a few species of filamentous bacteria belonging to the family Actinomycetaceae (33). Among the fungi, Myceliophthora thermophila is of considerable interest, since it grows well on cellulose in submerged culture at 50°C and pH 4.5 and synthesizes cellulolytic enzymes (10). Thus, the organism is acidophilic, as well as cellulolytic and thermophilic. Rosenberg (24) screened 21 species of thermophilic and thermotolerant fungi for the ability to degrade cellulose and found that 13 species had this ability. It was not determined whether these organisms could grow well in submerged culture under...

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In process integration studies of the biomass-to-ethanol conversion process, it is necessary to understand how cellulose conversion yields vary as a function of solids and enzyme loading and other key operating variables. The impact of solids loading on enzymatic cellulose hydrolysis of dilute acid pretreated corn stover slurry was determined using an experimental response surface design methodology. From the experimental work, an empirical correlation was obtained that expresses monomeric glucose yield from enzymatic cellulose hydrolysis as a function of solids loading, enzyme loading, and temperature. This correlation was used in a technoeconomic model to study the impact of solids loading on ethanol production economics. The empirical correlation was used to provide a more realistic assessment of process cost by accounting for changes in cellulose conversion yields at different solids and enzyme loadings as well as enzyme cost. As long as enzymatic cellulose conversion drops off at higher total solids loading (due to end-product inhibition or other factors), there is an optimum value for the total solids loading that minimizes the ethanol production cost. The optimum total solids loading shifts to higher values as enzyme cost decreases.

Efficient conversion of lignocellulosic biomass requires biocatalysts able to tolerate inhibitors produced by many pretreatment processes. Recombinant Zymomonas mobilis 8b, a recently developed integrant of Zymomonas mobilis 31821(pZB5), tolerated acetic acid up to 16 g l(-1) and achieved 82%-87% (w/w) ethanol yields from pure glucose/xylose solutions at pH 6 and temperatures of 30 degrees C and 37 degrees C. An ethanol yield of 85% (w/w) was achieved on glucose/xylose from hydrolysate produced by dilute sulfuric acid pretreatment of corn stover after an overliming' process was used to improve hydrolysate fermentability.