We present the first application of machine learning on per- and polyfluoroalkyl substances (PFAS) for predicting and rationalizing carbon-fluorine (C–F) bond dissociation energies to aid in their efficient treatment and removal. Using a variety of machine learning algorithms (including Random Forest, Least Absolute Shrinkage and Selection Operator Regression, and Feed-forward Neural Networks), we were able to obtain extremely accurate predictions for C–F bond dissociation energies (with deviations less than 0.70 kcal/mol) that are <i>within chemical accuracy</i> of the PFAS reference data. In addition, we show that our machine learning approach is extremely efficient (requiring less than 10 minutes to train the data and less than a second to predict the C–F bond dissociation energy of a new compound) and only needs knowledge of the simple chemical connectivity in a PFAS structure to yield reliable results – without recourse to a computationally expensive quantum mechanical calculation or a three-dimensional structure. Finally, we present an unsupervised machine learning algorithm that can automatically classify and rationalize chemical trends in PFAS structures that would otherwise have been difficult to humanly visualize/process manually. Collectively, these studies (1) comprise the first application of machine learning techniques for PFAS structures to predict/rationalize C–F bond dissociation energies and (2) show immense promise for assisting experimentalists in the <i>targeted</i> defluorination of specific bonds in PFAS structures (or other unknown environmental contaminants) of increasing complexity.
We present an open-source software package, NIC-CAGE (Novel Implementation of Constrained Calculations for Automated Generation of Excitations), for predicting quantum optimal control fields in photo-excited chemical systems. Our approach utilizes newly derived analytic gradients for maximizing the transition probability (based on a norm-conserving Crank-Nicolson propagation scheme) for driving a system from a known initial quantum state to another desired state. The NIC-CAGE code is written in the MATLAB and Python programming environments to aid in its readability and general accessibility to both users and practitioners. Throughout this work, we provide several examples and outputs on a variety of different potentials, propagation times, and user-defined parameters to demonstrate the robustness of the NIC-CAGE software package. As such, the use of this predictive tool by both experimentalists and theorists could lead to further advances in both understanding and controlling the dynamics of photo-excited systems.
We present an open-source software package, NIC-CAGE (Novel Implementation of Constrained Calculations for Automated Generation of Excitations), for predicting quantum optimal control fields in photo-excited chemical systems. Our approach utilizes newly derived analytic gradients for maximizing the transition probability (based on a norm-conserving Crank-Nicolson propagation scheme) for driving a system from a known initial quantum state to another desired state. The NIC-CAGE code is written in the MATLAB and Python programming environments to aid in its readability and general accessibility to both users and practitioners. Throughout this work, we provide several examples and outputs on a variety of different potentials, propagation times, and user-defined parameters to demonstrate the robustness of the NIC-CAGE software package. As such, the use of this predictive tool by both experimentalists and theorists could lead to further advances in both understanding and controlling the dynamics of photo-excited systems.
We present an open-source software package, NIC-CAGE (Novel Implementation of Constrained Calculations for Automated Generation of Excitations), for predicting quantum optimal control fields in photo-excited chemical systems. Our approach utilizes newly derived analytic gradients for maximizing the transition probability (based on a norm-conserving Crank-Nicolson propagation scheme) for driving a system from a known initial quantum state to another desired state. The NIC-CAGE code is written in the MATLAB and Python programming environments to aid in its readability and general accessibility to both users and practitioners. Throughout this work, we provide several examples and outputs on a variety of different potentials, propagation times, and user-defined parameters to demonstrate the robustness of the NIC-CAGE software package. As such, the use of this predictive tool by both experimentalists and theorists could lead to further advances in both understanding and controlling the dynamics of photo-excited systems.
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