The leaf‐eared mouse, Phyllotis xanthopygus (Waterhouse 1837) is a widely distributed sigmodontine rodent in South America, with populations ranging from central Peru to southern Argentina and Chile. Previous morphological and molecular contributions have suggested that P. xanthopygus represents a species complex. In order to characterize and disclose this cryptic species complex, we perform a molecular genetic/phylogenetic analysis of representative samples across its geographical distribution. Phylogenetic analyses were based on sequences of cytochrome‐b gene (801 base pairs; n = 114 specimens) and analysed by maximum likelihood and Bayesian approaches. We also employed a Bayesian implementation of the Poisson tree processes (bPTP) as a unilocus species delimitation method. Results from our phylogenetic analyses retrieve eight well‐supported clades. Five of these clades belong to populations known as P. xanthopygus s.l., which were paraphyletic to the closely related species P. bonariensis, P. caprinus, and P. limatus, displaying strong genetic divergences (>8%). The (bPTP) analyses recovered ten species within P. xanthopygus s.l. plus related forms (i.e. P. bonariensis, P. caprinus, and P. limatus). Our results, coupled with chromosomal and morphological evidences, support the recognition of these clades at the species level and provide a new framework to characterize the leaf‐eared mice complex. Our study highlights the importance of integrative approaches in disentangling the biodiversity of Neotropical rodents.

Aim: Comprehensive, global information on species’ occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often represent a species’ only available distributional information and play an increasing role in conservation assessments and macroecology. We provide global range maps for the native ranges of all extant mammal species harmonised to the taxonomy of the Mammal Diversity Database (MDD) mobilised from two sources, the Handbook of the Mammals of the World (HMW) and the Illustrated Checklist of the Mammals of the World (CMW). Location: Global. Taxon: All extant mammal species. Methods: Range maps were digitally interpreted, georeferenced, error-checked and subsequently taxonomically aligned between the HMW (6253 species), the CMW (6431 species) and the MDD taxonomies (6362 species). Results: Range maps can be evaluated and visualised in an online map browser at Map of Life ( mol.org ) and accessed for individual or batch download for non-commercial use. Main conclusion: Expert maps of species’ global distributions are limited in their spatial detail and temporal specificity, but form a useful basis for broad-scale characterizations and model-based integration with other data. We provide georeferenced range maps for the native ranges of all extant mammal species as shapefiles, with species-level metadata and source information packaged together in geodatabase format. Across the three taxonomic sources our maps entail, there are 1784 taxonomic name differences compared to the maps currently available on the IUCN Red List website. The expert maps provided here are harmonised to the MDD taxonomic authority and linked to a community of online tools that will enable transparent future updates and version control.

The genome of the red vizcacha rat (Rodentia, Octodontidae, Tympanoctomys barrerae) is the largest of all mammals, and about double the size of their close relative, the mountain vizcacha rat Octomys mimax, even though the lineages that gave rise to these species diverged from each other only about 5 Ma. The mechanism for this rapid genome expansion is controversial, and hypothesized to be a consequence of whole genome duplication or accumulation of repetitive elements. To test these alternative but nonexclusive hypotheses, we gathered and evaluated evidence from whole transcriptome and whole genome sequences of T. barrerae and O. mimax. We recovered support for genome expansion due to accumulation of a diverse assemblage of repetitive elements, which represent about one half and one fifth of the genomes of T. barrerae and O. mimax, respectively, but we found no strong signal of whole genome duplication. In both species, repetitive sequences were rare in transcribed regions as compared with the rest of the genome, and mostly had no close match to annotated repetitive sequences from other rodents. These findings raise new questions about the genomic dynamics of these repetitive elements, their connection to widespread chromosomal fissions that occurred in the T. barrerae ancestor, and their fitness effects—including during the evolution of hypersaline dietary tolerance in T. barrerae.

No abstract

Caviomorph rodents represent one of the most distinctive groups of mammals in southern South America drylands; they colonized South America from Africa via trans‐oceanic dispersions in the Eocene (40–50 Ma) and underwent an extraordinary ecological radiation after their arrival, thus making this group of great interest for biogeographic and evolutionary studies. The aim of this article was to provide a working hypothesis regarding the biogeographical history and ecological diversification of one of its conspicuous families, the Octodontidae. We reconstruct the evolutionary theater where their ecological diversification took place, and potential events of dispersal, vicariance and extinctions. We analyzed the historical biogeography of the Octodontidae across the eight ecoregions where they occur, based on species phylogeny and divergence times. Four approaches were used to reconstruct ancestral area: (1) Statistical Dispersal–Vicariance Snalysis (S‐DIVA); (2) Bayesian binary Markov chain Monte Carlo (MCMC) analysis implemented in Reconstruct Ancestral State in Phylogenies (RASP); (3) Fitch optimization method; and (d) weighted ancestral area analysis (WAAA). Parsimony ancestral state reconstructions were implemented in order to explore the evolutionary history of an ecological character, mode of life. We propose the northern portion of the Monte desert ecoregion as the ancestral area in the evolution of the Octodontidae, with subsequent dispersal and enlargement of the family geographic range. The evolution of their ecological specialization (i.e. modes of life) suggests an ambiguous ancestral condition (saxicolous, generalist terrestrial, semifossorial) linked to species adaptation to arid environments, with fossoriality appearing later in octodontid evolution. The evolution of the Octodontidae is associated with contrasting environmental conditions (i.e. climate and vegetation) produced by the Andean Uplift between eastern and western sides.