Durum wheat is the 10th most important crop in the world, and its use traces back to the origin of agriculture. Unfortunately, in the last century only part of the genetic diversity available for this species has been captured in modern varieties through breeding. Here, the population structure and genetic diversity shared among elites and landraces collected from 32 countries was investigated. A total of 370 entries were genotyped with Axiom 35K array to identify 8,173 segregating single nucleotide polymorphisms (SNPs). Of these, 500 were selected as highly informative with a PIC value above 0.32 and used to test population structure via DAPC, STRUCTURE, and neighbor joining tree. A total of 10 sub-populations could be identified, six constituted by modern germplasm and four by landraces of different geographical origin. Interestingly, genomic comparison among groups indicated that Middle East and Ethiopia had the lowest level of allelic diversity, while breeding programs and landraces collected outside these regions were the richest in rare alleles. Further, phylogenetic analysis among landraces indicated that Ethiopia might represent a second center of origin of durum wheat, rather than a second domestication site as previously believed. Together, the analyses carried here provide a global picture of the available genetic diversity for this crop and shall guide its targeted use by breeders.
The research is financed by Swedish Research Council (Vetenskapsradet) U-Forsk2013, "Deployment of molecular durum breeding to the Senegal Basin: capacity building to face global warming".
AbstractThe Senegal River basin (Guinea, Mali, Mauritania, and Senegal) is a key agricultural production area in sub-Saharan Africa. Here, rice fields are left fallow during the cooler winter season, when the night temperatures reach 16 °C but the maximum daily temperatures remain above 30 °C. This season was used for the first time to conduct multi-environmental trials of durum wheat. Twenty-four elite breeding lines and cultivars were tested for adaptation during seasons 2014-15 and 2015-16 at two stations: Kaedi, Mauritania and Fanaye, Senegal. Phenological traits, grain yield and its components were recorded. Top grain yield was recorded at 5,330 kg ha -1 and the average yield at 2,484 kg ha -1 . The season lasted just 90 days from sowing to harvest. Dissection of the yield in its components revealed that biomass and spike fertility (i.e. number of seeds produced per spike) were the most critical traits for adaptation to these warm conditions. This second trait was confirmed in a validation experiment conducted in 2016-17 at the same two sites. Genotype × environment interaction was dissected by AMMI model, and the derived IPC values used to derive an 'AMMI wide adaptation index' (AWAI) to asses yield stability. The use of a selection index that combined adjusted means of yield and AWAI identified three genotypes as the most stable and high yielding: 'Bani Suef 5', 'DAWRyT118', and 'DAWRyT123'. The last two genotypes were also confirmed among the best in a validation trial conducted in season 2016-17. The data presented here are meant to introduce to the breeding community the use of these two research stations along the Senegal River for assessing heat tolerance of wheat or other winter cereals, as well as presenting two new ideal germplasm sources for heat tolerance, and the identification of spike fertility as the key trait controlling adaptation to heat stress.
Ulvan, carrageenan, alginate and laminarin were tested in olive trees' twigs to elicit phenolic metabolism and control verticillium wilt of olive (VWO) caused by Verticillium dahliae. The elicitation effect was determined through phenylalanine ammonia-lyase activity, total polyphenol content and lignin content. VWO was assessed in twigs previously elicited (24 h) and maintained in a solution containing bio-elicitors (2 g/L) and conidial suspension (10 6 conidia/mL). Our results showed stimulation of the phenolic metabolism and the decline of wilt symptoms. Ulvan reduced significantly the area under the disease progress curve for severity to 39.9% and the final incidence to 28.9%. Ulvan and alginate produced significant inhibitory rates on mycelial growth of the fungus in vitro. Seaweed polysaccharides might help to overcome VWO by strengthening the host defense metabolism and restricting the pathogen's growth.
Forty rhizobia nodulating four Acacia species (A. gummifera, A. raddiana, A. cyanophylla, and A. horrida) were isolated from different sites in Morocco. These rhizobia were compared by analyzing both the 16S rRNA gene (rDNA) and the 16S-23S rRNA spacer by PCR with restriction fragment length polymorphism (RFLP) analysis. Analysis of the length of 16S-23S spacer showed a considerable diversity within these microsymbionts, but RFLP analysis of the amplified spacer revealed no additional heterogeneity. Three clusters were identified when 16S rDNA analysis was carried out. Two of these clusters include some isolates which nodulate, nonspecifically, the four Acacia species. These clusters, A and B, fit within the Sinorhizobiumlineage and are closely related to S. meliloti and S. fredii, respectively. The third cluster appeared to belong to theAgrobacterium-Rhizobium galegae phylum and is more closely related to the Agrobacterium tumefaciens species. These relations were confirmed by sequencing a representative strain from each cluster.
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