We introduce a novel method of prospectively compensating for subject motion in neuroanatomical imaging. Short 3D EPI volumetric navigators (vNavs) are embedded in a long 3D sequence, and the resulting image volumes registered to provide an estimate of the subject’s location in the scanner at a cost of less than 500 ms, ~ 1% change in contrast, and ~ 3% change in intensity. This time fits well into the existing gaps in sequences routinely used for neuroimaging, thus giving a motion-corrected sequence with no extra time required. We also demonstrate motion-driven selective reacquisition of k-space to further compensate for subject motion. We perform multiple validation experiments to evaluate accuracy, navigator impact on tissue intensity/contrast, and the improvement in final output. The complete system operates without adding additional hardware to the scanner and requires no external calibration, making it suitable for high-throughput environments.

Displacement encoding with stimulated echoes (DENSE) encodes myocardial tissue displacement into the phase of the MR image. Cine DENSE allows for rapid quantification of myocardial displacement at multiple cardiac phases through the majority of the cardiac cycle. For practical sensitivities to motion, relatively high displacement encoding frequencies are used and phase wrapping typically occurs. In order to obtain absolute measures of displacement, a two-dimensional (2-D) quality-guided phase unwrapping algorithm was adapted to unwrap both spatially and temporally. Both a fully automated algorithm and a faster semi-automated algorithm are proposed. A method for computing the 2-D trajectories of discrete points in the myocardium as they move through the cardiac cycle is introduced. The error in individual displacement measurements is reduced by fitting a time series to sequential displacement measurements along each trajectory. This improvement is in turn reflected in strain maps, which are derived directly from the trajectories. These methods were validated both in vivo and on a rotating phantom. Further measurements were made to optimize the displacement encoding frequency and to estimate the baseline strain noise both on the phantom and in vivo. The fully automated phase unwrapping algorithm was successful for 767 out of 800 images (95.9%), and the semi-automated algorithm was successful for 786 out of 800 images (98.3%). The accuracy of the tracking algorithm for typical cardiac displacements on a rotating phantom is 0.24 +/- 0.15 mm. The optimal displacement encoding frequency is in the region of 0.1 cycles/mm, and, for 2 scans of 17-s duration, the strain noise after temporal fitting was estimated to be 2.5 +/- 3.0% at end-diastole, 3.1 +/- 3.1% at end-systole, and 5.3 +/- 5.0% in mid-diastole. The improvement in intra-myocardial strain measurements due to temporal fitting is apparent in strain histograms, and also in identifying regions of dysfunctional myocardium in studies of patients with infarcts.

Background Ascending aortic dilation is important in bicuspid aortic valve disease (BAV), with increased risk of aortic dissection. We used cardiovascular magnetic resonance (CMR) to understand the pathophysiology better by examining the links between 3-dimensional flow abnormalities, aortic function and aortic dilation. Methods and Results 142 subjects underwent CMR (mean age 40 years; 95 with BAV, 47 healthy volunteers [HV]). BAV patients had predominantly abnormal right-handed helical flow in the ascending aorta, larger ascending aortas (18.3 ±3.3 vs. 15.2 ±2.2mm/m2, p<0.001), and higher rotational (helical) flow (31.7 ±15.8 vs. 2.9 ±3.9mm2/s, p<0.001), systolic flow angle (23.1 ±12.5 vs. 7.0 ±4.6°, p<0.001) and systolic wall shear stress (WSS) (0.85 ±0.28 vs. 0.59 ±0.17N/m2, p<0.001) compared to HV. BAV with right-handed flow and right-non coronary cusp fusion (n= 31) showed more severe flow abnormalities (rotational flow 38.5 ±16.5 vs. 27.8 ±12.4mm2/s, p<0.001; systolic flow angle 29.4 ±10.9 vs. 19.4 ±11.4°, p<0.001; in-plane WSS 0.64 ±0.23 vs. 0.47 ±0.22N/m2, p<0.001) and larger aortas (19.5 ±3.4 vs. 17.5 ±3.1mm/m2, p<0.05) than right-left cusp fusion (n=55). BAV patients with normal flow patterns had similar aortic dimensions and WSS to HV and younger BAV patients showed abnormal flow patterns but no aortic dilation, both further supporting the importance of flow pattern in the etiology of aortic dilation. Aortic function measures (distensibility, aortic strain and pulse wave velocity) were similar across all groups. Conclusions Flow abnormalities may be a major contributor to aortic dilation in BAV. Fusion type affects the severity of flow abnormalities, and may allow better risk prediction and selection of patients for earlier surgical intervention.

Combined fMRI-MRS is a novel method to non-invasively investigate functional activation in the human brain using simultaneous acquisition of hemodynamic and neurochemical measures. The aim of the current study was to quantify neural activity using combined fMRI-MRS at 7 T. BOLD-fMRI and semi-LASER localization MRS data were acquired from the visual cortex of 13 participants during short blocks (64 s) of flickering checkerboards. We demonstrate a correlation between glutamate and BOLD-fMRI time courses (R=0.381, p=0.031). In addition, we show increases in BOLD-fMRI (1.43±0.17%) and glutamate concentrations (0.15±0.05 I.U., ~2%) during visual stimulation. In contrast, we observed no change in glutamate concentrations in resting state MRS data during sham stimulation periods. Spectral line width changes generated by the BOLD-response were corrected using line broadening. In summary, our results establish the feasibility of concurrent measurements of BOLD-fMRI and neurochemicals using a novel combined fMRI-MRS sequence. Our findings strengthen the link between glutamate and functional activity in the human brain by demonstrating a significant correlation of BOLD-fMRI and glutamate over time, and by showing ~2% glutamate increases during 64 s of visual stimulation. Our tool may become useful for studies characterizing functional dynamics between neurochemicals and hemodynamics in health and disease.

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In population groups where head pose cannot be assumed to be constant during a magnetic resonance spectroscopy examination or in difficult-to-shim regions of the brain, realtime volume of interest, frequency, and shim optimization may be necessary. We investigate the effect of pose change on the B 0 homogeneity of a (2 cm) 3 volume and observe typical first-order shim changes of 1 mT/m per 1°rotation (chin down to up) in four different volumes of interest in a single volunteer. An echo planar imaging volume navigator was constructed to measure and apply in real-time within each pulse repetition time: volume of interest positioning, frequency adjustment, and first-order shim adjustment. This volume navigator is demonstrated in six healthy volunteers and achieved a mean linewidth of 4.4 Hz, similar to that obtained by manual shim adjustment of 4.9 Hz. Furthermore, this linewidth is maintained by the volume navigator at 4.9 Hz in the presence of pose change. By comparison, a mean linewidth of 7.5 Hz was observed, when no correction was applied. Single voxel spectroscopy (SVS) relies on a homogeneous B 0 , a consistent frequency, and assumes that the localization remains valid for the duration of the scan. For a restless subject, who is unable to maintain a consistent pose during the scan, these do not hold true. We present a method that provides real-time (once every pulse repetition time [TR]) B 0 and frequency measurements in addition to real-time correction of the volume of interest (VOI) position.Current motion and artifact correction methods in magnetic resonance spectroscopy can be divided into two categories: phase and frequency adjustments and localization correction. Phase and frequency adjustments refer to a group of techniques that measure the signal phase and frequency by using either the residual water signal (1-4) or a secondary navigator (5-7). These methods correct both a velocity-induced phase error and frequency changes that result from either scanner drift or pose change. Phase and frequency adjustments can be applied both retrospectively and prospectively, but only prospective methods are able to correct the change in water saturation frequency.Localization correction techniques in magnetic resonance spectroscopy have been demonstrated using an optical tracking system (7) and an imaging navigator technique called PROspective MOtion correction (PROMO) (8). The technique presented by Zaitsev et al. (7) provides both frequency and localization correction by combining optical tracking with navigator based frequency correction in addition to reacquisition of free induction decays (FIDs) with velocity induced phase errors. The disadvantages of an optical device are that they require: additional hardware, a marker to be rigidly affixed to the head, a clear line of sight between camera and marker, and the calibration of a camera to scanner transform.There are several navigator-based motion tracking methods available, which take advantage of the k-space properties of rigid body transforms to subsample ks...

Gamma-aminobutyric acid (GABA) and glutamate (Glu) are the major neurotransmitters in the brain. They are crucial for the functioning of healthy brain and their alteration is a major mechanism in the pathophysiology of many neuro-psychiatric disorders. Magnetic resonance spectroscopy (MRS) is the only way to measure GABA and Glu non-invasively in vivo. GABA detection is particularly challenging and requires special MRS techniques. The most popular is MEscher-GArwood (MEGA) difference editing with single-voxel Point RESolved Spectroscopy (PRESS) localization. This technique has three major limitations: a) MEGA editing is a subtraction technique, hence is very sensitive to scanner instabilities and motion artifacts. b) PRESS is prone to localization errors at high fields (≥3T) that compromise accurate quantification. c) Single-voxel spectroscopy can (similar to a biopsy) only probe average GABA and Glu levels in a single location at a time. To mitigate these problems, we implemented a 3D MEGA-editing MRS imaging sequence with the following three features: a) Real-time motion correction, dynamic shim updates, and selective reacquisition to eliminate subtraction artifacts due to scanner instabilities and subject motion. b) Localization by Adiabatic SElective Refocusing (LASER) to improve the localization accuracy and signal-to-noise ratio. c) K-space encoding via a weighted stack of spirals provides 3D metabolic mapping with flexible scan times. Simulations, phantom and in vivo experiments prove that our MEGA-LASER sequence enables 3D mapping of GABA+ and Glx (Glutamate + Gluatmine), by providing 1.66 times larger signal for the 3.02 ppm multiplet of GABA+ compared to MEGA-PRESS, leading to clinically feasible scan times for 3D brain imaging. Hence, our sequence allows accurate and robust 3D-mapping of brain GABA+ and Glx levels to be performed at clinical 3T MR scanners for use in neuroscience and clinical applications.

BackgroundThe Whitehall II (WHII) study of British civil servants provides a unique source of longitudinal data to investigate key factors hypothesized to affect brain health and cognitive ageing. This paper introduces the multi-modal magnetic resonance imaging (MRI) protocol and cognitive assessment designed to investigate brain health in a random sample of 800 members of the WHII study.Methods/designA total of 6035 civil servants participated in the WHII Phase 11 clinical examination in 2012–2013. A random sample of these participants was included in a sub-study comprising an MRI brain scan, a detailed clinical and cognitive assessment, and collection of blood and buccal mucosal samples for the characterisation of immune function and associated measures. Data collection for this sub-study started in 2012 and will be completed by 2016. The participants, for whom social and health records have been collected since 1985, were between 60–85 years of age at the time the MRI study started. Here, we describe the pre-specified clinical and cognitive assessment protocols, the state-of-the-art MRI sequences and latest pipelines for analyses of this sub-study.DiscussionThe integration of cutting-edge MRI techniques, clinical and cognitive tests in combination with retrospective data on social, behavioural and biological variables during the preceding 25 years from a well-established longitudinal epidemiological study (WHII cohort) will provide a unique opportunity to examine brain structure and function in relation to age-related diseases and the modifiable and non-modifiable factors affecting resilience against and vulnerability to adverse brain changes.