Biochemical analysis of amylose-extender (ae) mutant of rice (Oryza sativa) revealed that the mutation in the gene for starch-branching enzyme IIb (BEIIb) specifically altered the structure of amylopectin in the endosperm by reducing short chains with degree of polymerization of 17 or less, with the greatest decrease in chains with degree of polymerization of 8 to 12. The extent of such change was correlated with the gelatinization properties of the starch granules, as determined in terms of solubility in urea solution. The ae mutation caused a dramatic reduction in the activity of BEIIb. The activity of soluble starch synthase I (SSI) in the ae mutant was significantly lower than in the wild type, suggesting that the mutation had a pleiotropic effect on the SSI activity. In contrast, the activities of BEI, BEIIa, ADP-Glc pyrophosphorylase, isoamylase, isoamylase, pullulanase, and Suc synthase were not affected by the mutation. Therefore, it is stressed that the function of BEIIb cannot be complemented by BEIIa and BEI. These results strongly suggest that BEIIb plays a specific role in the transfer of short chains, which might then be extended by SS to form the A and B 1 chains of amylopectin cluster in rice endosperm.Starch is composed of two types of molecule, namely amylose and amylopectin. Amylose is an essentially linear molecule composed of ␣(134)-linked glucosidic chains, whereas amylopectin is a highly branched glucan with ␣(136) glucosidic bonds that connect linear chains. The ␣-1,4 chains of amylopectin consist of A chains that carry no additional chains, B chains that carry A chains or other B chains, and a C chain that includes the reducing terminus (Peat et al., 1952). Hizukuri (1986) proposed a cluster model for amylopectin. In this model, A and B 1 chains form a single cluster, whereas B 2 and B 3 chains extend to two and three clusters, respectively. Hanashiro et al. (1996) proposed that, in amylopectin, chains of degree of polymerization (DP) Ϲ12, 13 Ϲ DP Ϲ 24, 25 Ϲ DP Ϲ 36, and DP м 37 correspond to A chains, B 1 chains, B 2 chains, and B 3 and longer chains, respectively.