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Phytoflagellates <10 μm substantially contribute to the abundance, biomass and primary production in polar waters, but information on the distribution of specific groups is scarce. We applied catalysed reporter deposition-fluorescence in situ hybridization to investigate the distribution of total phytoflagellates and of eight specific groups along a 100 km transect west off Kongsfjorden (Spitsbergen) from 29 to 31 July 2010. Phytoflagellates contributed to >75% of the depth-integrated abundance and biomass of total eukaryotes <10 μm at all stations. Their depth-integrated abundance and biomass decreased along the transect from 1.5 × 10(12)  cells m(-2) (6.6 × 10(12)  pgC m(-2) ) at the outermost station to 1.7 × 10(10)  cells m(-2) (4.7 × 10(10) pgC m(-2) ) at the innermost station. Chlorophytes contributed to the total abundance of phytoflagellates with a range from 13% to 87% (0.7-30.5 × 10(3)  cells ml(-1) ), and predominated in open waters. The contribution of haptophytes was < 1-38% (10-4500 cells ml(-1) ). The other groups represented <10%. The temperature and salinity positively correlated with the total abundance of phytoflagellates, chlorophytes, haptophytes, bolidophytes and pelagophytes. Cryptophytes, pedinellids and pavlovophytes were negatively associated with the nutrient concentrations. The community composition of phytoflagellates changed along the transect, which could have implications on food web dynamics and biogeochemical cycles between the open ocean environment and Kongsfjorden investigated here.

A multi-scale approach was used to evaluate which spatial gradient of environmental variability is the most important in structuring zooplankton diversity in the West Spitsbergen Current (WSC). The WSC is the main conveyor of warm and biologically rich Atlantic water to the Arctic Ocean through the Fram Strait. The data set included 85 stratified vertical zooplankton samples (obtained from depths up to 1000 metres) covering two latitudinal sections (76°30’N and 79°N) located across the multi-path WSC system. The results indicate that the most important environmental variables shaping the zooplankton structural and functional diversity and standing stock variability are those associated with depth, whereas variables acting in the horizontal dimension are of lesser importance. Multivariate analysis of the zooplankton assemblages, together with different univariate descriptors of zooplankton diversity, clearly illustrated the segregation of zooplankton taxa in the vertical plane. The epipelagic zone (upper 200 m) hosted plentiful, Oithona similis-dominated assemblages with a high proportion of filter-feeding zooplankton. Although total zooplankton abundance declined in the mesopelagic zone (200–1000 m), zooplankton assemblages in that zone were more diverse and more evenly distributed, with high contributions from both herbivorous and carnivorous taxa. The vertical distribution of integrated biomass (mg DW m-2) indicated that the total zooplankton biomass in the epipelagic and mesopelagic zones was comparable. Environmental gradients acting in the horizontal plane, such as the ones associated with different ice cover and timing of the spring bloom, were reflected in the latitudinal variability in protist community structure and probably caused differences in succession in the zooplankton community. High abundances of Calanus finmarchicus in the WSC core branch suggest the existence of mechanisms advantageous for higher productivity or/and responsible for physical concentration of zooplankton. Our results indicate that regional hydrography plays a primary role in shaping zooplankton variability in the WSC on the way to the Arctic Ocean, with additional effects caused by biological factors related to seasonality in pelagic ecosystem development, resulting in regional differences in food availability or biological production between the continental slope and the deep ocean regions.

Hornsund and Kongsfjorden are two similar-sized Arctic fjords on the West coast of Spitsbergen. They are influenced by cold coastal Arctic water (Hornsund) and warmer Atlantic water (Kongsfjorden). Environmental conditions affect the timing, quantity, spatial distribution (horizontal and vertical) of spring and summer blooms of protists as well as the taxonomic composition of those assemblages. Here, we compile published data and unpublished own measurement from the past two decades to compare the environmental factors and primary production in two fjord systems. Kongsfjorden is characterized by a deeper euphotic zone, higher biomass and greater proportion of autotrophic species. Hornsund seems to obtain more nutrients due to the extensive seabird colonies and exhibits higher turbidity compared to Kongsfjorden. The annual primary production in the analysed fjords ranges from 48 g C m -2 y -1 in Kongsfjorden to 216 g C m -2 y -1 in Hornsund, with a dominant component of microplankton (90%) followed by macrophytes and microphytobenthos.

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Across the Arctic Ocean, rapid sea ice retreat and thinning are occurring as a consequence of climate change (Stroeve & Notz, 2018). The Eurasian sector of the Arctic Ocean used to have prominent seasonal ice cover but has experienced large sea ice losses in recent years, especially during winter (Onarheim et al., 2018;Polyakov et al., 2017). The area north of Svalbard is part of the European Arctic Corridor with the greatest exchange of water in and out of the Arctic (Wassmann et al., 2010). The largest winter sea ice loss of the entire Arctic Ocean was recorded here between 1979 and 2012 (Onarheim et al., 2014), likely because of increased storm frequency and warmer temperatures of the Atlantic water (AW) advected into the area (Duarte et al., 2020;Renner et al., 2018). Unlike many regions of the Arctic Ocean that are strongly stratified, weakly stratified AW enters the area north and east of Svalbard and is exposed to direct ventilation in winter, caused by cooling and weakening of the halocline during sea-ice formation; a process called Atlantification (Polyakov et al., 2017). The shallower AW inflow