Syndiotactic polypropylenes (sPPs) with several microstructures (i.e., syndiotacticities and molecular weights) and synthesized by means of two metallocenic catalysts were melt-blended with 1 and 3 wt % organophilic layered silicates in the presence of a compatibilizer. X-ray diffraction and transmission electron microscopy analysis showed that the clay was well dispersed in the composites, although the filler morphology depended on the polymer microstructure. Polypropylenes with low syndiotacticities and molecular weights presented the best clay dispersion. Nonisothermal differential scanning calorimetry analysis showed that the polymer microstructure and the clay content modified the thermal behavior of the composites. The compatibilizer and the clay acted as nucleant agents to increase the crystallization temperature of the matrix. Moreover, the double endothermic peak observed during heating scan and associated with the melt/recrystallization/remelt processes of the pure polymer matrix was reduced in the composites. With regard to the mechanical properties under tensile conditions, a synergic effect of the compatibilizer and the clay was observed. In particular, the addition of the compatibilizer alone was able to increase by about 20% the elastic modulus relative to the neat samples, whereas increases between 35 and 50% were measured when the clay was also added, depending on the polymer microstructure. Our results show that the microstructure of sPPs had strong effects on the behavior of its composites with clay in the presence of a compatibilizer.